WormBase Tree Display for Variation: WBVar00244124
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WBVar00244124 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00244124 | |||
Other_name | snp_F10D2[1] | ||||
cewivar00235940 | |||||
CE09318:p.Leu411= | |||||
F10D2.7.1:c.1231C>T | |||||
HGVSg | CHROMOSOME_V:g.7146045G>A | ||||
Sequence_details | SMap | S_parent | Sequence | F10D2 | |
Flanking_sequences | gactttcccagatcatatttcgata | ctcgatagatccattgtgacggaca | |||
Mapping_target | F10D2 | ||||
Type_of_mutation | Substitution | G | A | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | Million_mutation_project_reanalysis | ||
Analysis | SNP_Wicks | ||||
Million_mutation_project_reanalysis | |||||
Status | Live | ||||
Affects | Gene | WBGene00017333 | |||
Transcript | F10D2.7.1 | VEP_consequence | synonymous_variant | ||
VEP_impact | LOW | ||||
HGVSc | F10D2.7.1:c.1231C>T | ||||
HGVSp | CE09318:p.Leu411= | ||||
cDNA_position | 1231 | ||||
CDS_position | 1231 | ||||
Protein_position | 411 | ||||
Exon_number | 5/6 | ||||
Codon_change | Cta/Tta | ||||
Amino_acid_change | L | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.9391 VarS=AG | ||||
Enzymes. Bristol-specific: [AluI,BsaLI,CviJI,CviKI,CviLI,CviMI,CviNI,CviOI,CviTI,MarI,MltI,OtuI,OtuNI,OxaI,Uba1433I,Uba1441I]. CB4856-specific [none]. | |||||
[20040130 db] this Locus was previously named snp_F10D2.1 | |||||
[20040130 db] this Allele was previously named snp_F10D2.1 | |||||
[20090224 db] original Wicks name : F10D2:13522..14489@470 Psnp=0.9391 VarS=AG | |||||
[20090224 db] original Wicks id : eam35e05.s1@398,a,51 | |||||
[20090224 db] Snip-SNP | |||||
Method | SNP_Wicks |