WormBase Tree Display for Variation: WBVar00244060
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| WBVar00244060 | Name | Public_name | WBVar00244060 | ||
|---|---|---|---|---|---|
| Other_name | snp_F08D12[12] | ||||
| haw127360 | |||||
| cewivar00182120 | |||||
| CE44851:p.Pro466= | |||||
| K12H6.1.1:c.1398C>A | |||||
| HGVSg | CHROMOSOME_II:g.2796626G>T | ||||
| Sequence_details | SMap | S_parent | Sequence | F08D12 | |
| Flanking_sequences | tggagctcgacgaatgcaccatacg | ggctcactgtgtcgccggccgagat | |||
| Mapping_target | F08D12 | ||||
| Type_of_mutation | Substitution | G | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| RFLP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00023286 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | AX | ||||
| Person | WBPerson4037 | ||||
| Analysis | SNP_Wicks | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar01365172 | |||
| WBVar00547225 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00003709 | |||
| Transcript | K12H6.1.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | K12H6.1.1:c.1398C>A | ||||
| HGVSp | CE44851:p.Pro466= | ||||
| cDNA_position | 1416 | ||||
| CDS_position | 1398 | ||||
| Protein_position | 466 | ||||
| Exon_number | 8/12 | ||||
| Codon_change | ccC/ccA | ||||
| Amino_acid_change | P | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00004703 | |||||
| WBPaper00037807 | |||||
| Remark | Predicted SNP: Psnp=0.7349 VarS=GT | ||||
| Enzymes. Bristol-specific: [AocII,BanII,Bka1125I,BmyI,BpuI,BscMI,BsoCI,Bsp117I,Bsp1286I,Bsp519I,BspLS2I,BstDZ247I,BstZ15I,BstZ7I,Bsu1854I,BvuI,Cfr48I,Eco113I,Eco180I,Eco211I,Eco215I,Eco216I,Eco232I,Eco249I,Eco24I,Eco25I,Eco262I,Eco26I,Eco35I,Eco68I,Eco75KI,EcoT38I,EcoT88I,EcoT93I,EcoT95I,Ese4I,FriOI,HpyF36IV,HpyF47I,KoxII,Mlu40I,NspII,OmiAI,OmiBI,PaeHI,Ppu20I,Psp31I,SacNI,SduI,TseAI,Uba1124I,Uba1142I,Uba1159I,Uba1206I,Uba1263I,Uba1264I,Uba1307I,Uba1329I,Uba1330I,Uba1357I,Uba1362I,Uba1363I,Uba1409I,Uba1421I,Uba39I,Uba57I]. CB4856-specific [none]. | |||||
| [20040130 db] this Locus was previously named snp_F08D12.12 | |||||
| [20040130 db] this Allele was previously named snp_F08D12.12 | |||||
| [20090224 db] original Wicks name : F08D12:31500..32445@413 Psnp=0.7349 VarS=GT | |||||
| [20090224 db] original Wicks id : eam69a07.s1@482,t,33 | |||||
| [20090224 db] Snip-SNP | |||||
| Method | SNP_Wicks |
