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WormBase Tree Display for Variation: WBVar00244057

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Name Class

WBVar00244057NamePublic_nameWBVar00244057
Other_namesnp_F08D12[9]
cewivar00120701
F08D12.2.1:c.404-128T>A
HGVSgCHROMOSOME_II:g.2782557T>A
Sequence_detailsSMapS_parentSequenceF08D12
Flanking_sequencesatagtaaataaaaaattttcaaaaatttttgaaaagttttatattgatat
Mapping_targetF08D12
Type_of_mutationSubstitutionTA
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004599From_analysisMillion_mutation_project_reanalysis
WBStrain00004602From_analysisSNP_Wicks
WGS_De_Bono
Million_mutation_project_reanalysis
WBStrain00023665From_analysisMillion_mutation_project_reanalysis
LaboratoryAX
AnalysisSNP_Wicks
WGS_De_Bono
Million_mutation_project_reanalysis
HistoryAcquires_mergeWBVar01365087
StatusLive
AffectsGeneWBGene00017246
TranscriptF08D12.2.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF08D12.2.1:c.404-128T>A
Intron_number5/8
ReferenceWBPaper00004703
WBPaper00037807
RemarkPredicted SNP: Psnp=0.9427 VarS=AT
Enzymes. SNP detectable only by sequencing.
[20040130 db] this Locus was previously named snp_F08D12.9
[20040130 db] this Allele was previously named snp_F08D12.9
[20090224 db] original Wicks name : F08D12:17460..18436@385 Psnp=0.9427 VarS=AT
[20090224 db] original Wicks id : eam69c02.s1@318,a,59
MethodSNP_Wicks