WormBase Tree Display for Variation: WBVar00243983

WBVar00243983 Evidence: Paper_evidence: WBPaper00004703
  Name: Public_name: WBVar00243983
    Other_name: snp_E02C12[9]
      cewivar00240350
      F36D4.3e.1:c.-1900A>G
      CE51630:p.Lys738=
      F36D4.3a.1:c.2214A>G
      F36D4.3b.1:c.2214A>G
      CE51572:p.Lys738=
    HGVSg: CHROMOSOME_V:g.9388639A>G
  Sequence_details: SMap: S_parent: Sequence: F36D4
    Flanking_sequences: ctgccctgtggagagacaaacctaa cagtttgcggaattagcatgccaac
    Mapping_target: F36D4
    Type_of_mutation: Substitution: A G
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP
    Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00004602 From_analysis: Million_mutation_project_reanalysis
      WBStrain00023072 From_analysis: Million_mutation_project_reanalysis
      WBStrain00023139 From_analysis: Million_mutation_project_reanalysis
      WBStrain00027648 From_analysis: Million_mutation_project_reanalysis
      WBStrain00027660 From_analysis: Million_mutation_project_reanalysis
      WBStrain00027662 From_analysis: Million_mutation_project_reanalysis
    Analysis: SNP_Wicks
      Million_mutation_project_reanalysis
    Status: Live
  Affects: Gene: WBGene00002036
    Transcript: F36D4.3b.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: F36D4.3b.1:c.2214A>G
        HGVSp: CE51630:p.Lys738=
        cDNA_position: 2269
        CDS_position: 2214
        Protein_position: 738
        Exon_number: 5/19
        Codon_change: aaA/aaG
        Amino_acid_change: K
      F36D4.3e.1 VEP_consequence: 5_prime_UTR_variant
        VEP_impact: MODIFIER
        HGVSc: F36D4.3e.1:c.-1900A>G
        cDNA_position: 1527
        Exon_number: 1/16
      F36D4.3a.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: F36D4.3a.1:c.2214A>G
        HGVSp: CE51572:p.Lys738=
        cDNA_position: 2263
        CDS_position: 2214
        Protein_position: 738
        Exon_number: 5/19
        Codon_change: aaA/aaG
        Amino_acid_change: K
  Reference: WBPaper00004703
  Remark: Predicted SNP: Psnp=0.8657 VarS=AG
    Enzymes. Bristol-specific: [Bst4CI,HpyCH4III,HpyF12I,HpyF20I,HpyF22I,HpyF35III,HpyF40I,HpyF41I,HpyF42II,HpyF46I,HpyF48II,HpyF51II,HpyF54I,HpyF55I,HpyF56I,HpyF58I,HpyF5II,HpyF62I,HpyF64II,HpyF65I,HpyF68I,HpyF69I,HpyF74I,HpyF9III,TaaI]. CB4856-specific [none].
    [20040130 db] this Locus was previously named snp_E02C12.9
    [20040130 db] this Allele was previously named snp_E02C12.9
    [20090224 db] original Wicks name : E02C12:39740..40640@329 Psnp=0.8657 VarS=AG
    [20090224 db] original Wicks id : yy47e01.s1@527,g,38
    [20090224 db] Snip-SNP
  Method: SNP_Wicks