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WormBase Tree Display for Variation: WBVar00243957

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Name Class

WBVar00243957EvidencePaper_evidenceWBPaper00004703
NamePublic_nameWBVar00243957
Other_namesnp_DC2[4]
cewivar00040883
DC2.6:n.722-551T>C
HGVSgCHROMOSOME_V:g.223730A>G
Sequence_detailsSMapS_parentSequenceDC2
Flanking_sequencesgttataattttatacaagagattaactgtgattttaagcgtgttgagcgg
Mapping_targetDC2
Type_of_mutationSubstitutionAG
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00000032From_analysisMillion_mutation_project_reanalysis
WBStrain00004602From_analysisSNP_Wicks
WBStrain00006622From_analysisMillion_mutation_project_reanalysis
WBStrain00022852From_analysisMillion_mutation_project_reanalysis
WBStrain00022899From_analysisMillion_mutation_project_reanalysis
WBStrain00027660From_analysisMillion_mutation_project_reanalysis
AnalysisSNP_Wicks
Million_mutation_project_reanalysis
StatusLive
AffectsGeneWBGene00005298
PseudogeneDC2.6VEP_consequenceintron_variant,non_coding_transcript_variant
VEP_impactMODIFIER
HGVScDC2.6:n.722-551T>C
Intron_number5/5
ReferenceWBPaper00004703
RemarkPredicted SNP: Psnp=0.8806 VarS=AG
Enzymes. Bristol-specific: [Bst4CI,HpyCH4III,HpyF12I,HpyF20I,HpyF22I,HpyF35III,HpyF40I,HpyF41I,HpyF42II,HpyF46I,HpyF48II,HpyF51II,HpyF54I,HpyF55I,HpyF56I,HpyF58I,HpyF5II,HpyF62I,HpyF64II,HpyF65I,HpyF68I,HpyF69I,HpyF74I,HpyF9III,TaaI]. CB4856-specific [none].
[20040130 db] this Locus was previously named snp_DC2.4
[20040130 db] this Allele was previously named snp_DC2.4
[20090224 db] original Wicks name : DC2:24052..24982@308 Psnp=0.8806 VarS=AG
[20090224 db] original Wicks id : eam50b02.s1@565,g,39
[20090224 db] Snip-SNP
MethodSNP_Wicks