WormBase Tree Display for Variation: WBVar00243957
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WBVar00243957 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00243957 | |||
Other_name | snp_DC2[4] | ||||
cewivar00040883 | |||||
DC2.6:n.722-551T>C | |||||
HGVSg | CHROMOSOME_V:g.223730A>G | ||||
Sequence_details | SMap | S_parent | Sequence | DC2 | |
Flanking_sequences | gttataattttatacaagagattaa | ctgtgattttaagcgtgttgagcgg | |||
Mapping_target | DC2 | ||||
Type_of_mutation | Substitution | A | G | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00000032 | From_analysis | Million_mutation_project_reanalysis | ||
WBStrain00004602 | From_analysis | SNP_Wicks | |||
WBStrain00006622 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00022852 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00022899 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027660 | From_analysis | Million_mutation_project_reanalysis | |||
Analysis | SNP_Wicks | ||||
Million_mutation_project_reanalysis | |||||
Status | Live | ||||
Affects | Gene | WBGene00005298 | |||
Pseudogene | DC2.6 | VEP_consequence | intron_variant,non_coding_transcript_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | DC2.6:n.722-551T>C | ||||
Intron_number | 5/5 | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.8806 VarS=AG | ||||
Enzymes. Bristol-specific: [Bst4CI,HpyCH4III,HpyF12I,HpyF20I,HpyF22I,HpyF35III,HpyF40I,HpyF41I,HpyF42II,HpyF46I,HpyF48II,HpyF51II,HpyF54I,HpyF55I,HpyF56I,HpyF58I,HpyF5II,HpyF62I,HpyF64II,HpyF65I,HpyF68I,HpyF69I,HpyF74I,HpyF9III,TaaI]. CB4856-specific [none]. | |||||
[20040130 db] this Locus was previously named snp_DC2.4 | |||||
[20040130 db] this Allele was previously named snp_DC2.4 | |||||
[20090224 db] original Wicks name : DC2:24052..24982@308 Psnp=0.8806 VarS=AG | |||||
[20090224 db] original Wicks id : eam50b02.s1@565,g,39 | |||||
[20090224 db] Snip-SNP | |||||
Method | SNP_Wicks |