WormBase Tree Display for Variation: WBVar00243848
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| WBVar00243848 | Evidence | Paper_evidence | WBPaper00004703 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00243848 | |||
| Other_name | snp_C54E10[3] | ||||
| cewivar00703767 | |||||
| C54E10.7.1:c.-18+2526_-18+2527insGA | |||||
| C54E10.1:n.805_806insGA | |||||
| HGVSg | CHROMOSOME_V:g.18816181_18816182insGA | ||||
| Sequence_details | SMap | S_parent | Sequence | C54E10 | |
| Flanking_sequences | gcttcatacttcgtcagcggaatcg | atgaacgggtcagtgggcagcttca | |||
| Mapping_target | C54E10 | ||||
| Type_of_mutation | Insertion | GA | |||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| RFLP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
| Million_mutation_project_reanalysis | |||||
| WBStrain00023072 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023139 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027648 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027660 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027662 | From_analysis | Million_mutation_project_reanalysis | |||
| Analysis | SNP_Wicks | ||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar01977701 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00008306 | |||
| WBGene00195058 | |||||
| Transcript | C54E10.7.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | C54E10.7.1:c.-18+2526_-18+2527insGA | ||||
| Intron_number | 5/7 | ||||
| Pseudogene | C54E10.1 | VEP_consequence | non_coding_transcript_exon_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | C54E10.1:n.805_806insGA | ||||
| cDNA_position | 805-806 | ||||
| Exon_number | 8/18 | ||||
| Reference | WBPaper00004703 | ||||
| Remark | Predicted SNP: Psnp=0.9368 VarI2=GA | ||||
| Enzymes. Bristol-specific: [AagI,Apu16I,Asp707I,BanIII,BavCI,BazI,BbvAII,Bci29I,BciBI,BcmI,Bco79I,BdiI,BfrAI,Bli41I,Bli576I,Bli585I,Bli86I,BliRI,Bsa29I,BscI,BseCI,Bsh108AI,BsiXI,Bsp106I,Bsp125I,Bsp126I,Bsp127I,Bsp145I,Bsp2I,Bsp4I,Bsp84I,BspDI,BspJII,BspOVII,BspXI,BspZEI,BsrCI,Bst28I,BstLVI,BstNZ169I,Bsu15I,BtuI,ClaI,Csp4I,CviSIII,EsaBC3I,Hpy26II,HpyF14III,HpyF16I,HpyF23I,HpyF24I,HpyF26III,HpyF30I,HpyF35I,HpyF40II,HpyF42IV,HpyF45I,HpyF49I,HpyF52I,HpyF59III,HpyF62II,HpyF64I,HpyF65II,HpyF66IV,HpyF71I,HpyF73II,HpyJP26II,HpyV,LcaI,LplI,PgaI,PpaAII,Rme21I,Ssp27144I,Taq20I,TaqI,Tbr51I,TfiA3I,TfiTok4A2I,TfiTok6A1I,TflI,Tsc4aI,Tsp32I,Tsp32II,Tsp358I,Tsp505I,Tsp510I,TspAK13D21I,TspAK16D24I,TspNI,TspVi4AI,TspVil3I,Tth24I,TthHB8I,TthRQI,Uba1096I,Uba1100I,Uba1133I,Uba1137I,Uba1138I,Uba1144I,Uba1145I,Uba1161I,Uba1168I,Uba1195I,Uba1196I,Uba1197I,Uba1198I,Uba1199I,Uba1200I,Uba1233I,Uba1238I,Uba1246I,Uba1257I,Uba1275I,Uba1286I,Uba1295I,Uba1315I,Uba1342I,Uba1366II,Uba1379I,Uba1380I,Uba1394I,Uba1412I,Uba1416I,Uba1427I,Uba1430I,Uba1451I,Uba1453I,Uba22I,Uba24I,Uba30I,Uba34I,Uba43I]. CB4856-specific [none]. | |||||
| [20040130 db] this Locus was previously named snp_C54E10.3 | |||||
| [20040130 db] this Allele was previously named snp_C54E10.3 | |||||
| [20090224 db] original Wicks name : C54E10:19599..21252@768 Psnp=0.9368 VarI2=GA | |||||
| [20090224 db] original Wicks id : eam35c09.s1@702,g,6 aab86g07.s1@58,a,51 | |||||
| [20090224 db] Snip-SNP | |||||
| Method | SNP_Wicks |
