WormBase Tree Display for Variation: WBVar00243843
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WBVar00243843 | Name | Public_name | WBVar00243843 | ||
---|---|---|---|---|---|
Other_name | snp_C54E4[1] | ||||
haw149737 | |||||
cewivar00033713 | |||||
C54E4.3.1:c.742+336A>G | |||||
HGVSg | CHROMOSOME_IV:g.2155876T>C | ||||
Sequence_details | SMap | S_parent | Sequence | C54E4 | |
Flanking_sequences | tccgcacttttatattttagggtcc | gcaacgaaaaacctttttccccata | |||
Mapping_target | C54E4 | ||||
Type_of_mutation | Substitution | T | C | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain (22) | |||||
Person | WBPerson4037 | ||||
Analysis | SNP_Wicks | ||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
History | Acquires_merge | WBVar00569602 | |||
Status | Live | ||||
Affects | Gene | WBGene00001557 | |||
Transcript | C54E4.3.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | C54E4.3.1:c.742+336A>G | ||||
Intron_number | 8/17 | ||||
Reference | WBPaper00038208 | ||||
WBPaper00004703 | |||||
Remark | Predicted SNP: Psnp=0.9427 VarS=CT | ||||
Enzymes. Bristol-specific: [CviRI,Hpy26I,HpyCH4V,HpyF36III,HpyF38II,HpyF44III,HpyF45II,HpyF48III,HpyF49V,HpyF67II,HpyJP26I]. CB4856-specific [none]. | |||||
[20040130 db] this Locus was previously named snp_C54E4.1 | |||||
[20040130 db] this Allele was previously named snp_C54E4.1 | |||||
[20090224 db] original Wicks name : C54E4:18650..19438@278 Psnp=0.9427 VarS=CT | |||||
[20090224 db] original Wicks id : yy59f01.s1@228,c,59 | |||||
[20090224 db] Snip-SNP | |||||
Method | SNP_Wicks |