Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Variation: WBVar00243843

expand all nodes | collapse all nodes | view schema

Name Class

WBVar00243843NamePublic_nameWBVar00243843
Other_namesnp_C54E4[1]
haw149737
cewivar00033713
C54E4.3.1:c.742+336A>G
HGVSgCHROMOSOME_IV:g.2155876T>C
Sequence_detailsSMapS_parentSequenceC54E4
Flanking_sequencestccgcacttttatattttagggtccgcaacgaaaaacctttttccccata
Mapping_targetC54E4
Type_of_mutationSubstitutionTC
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLP
Natural_variant
OriginSpeciesCaenorhabditis elegans
Strain (22)
PersonWBPerson4037
AnalysisSNP_Wicks
WGS_Yanai
Million_mutation_project_reanalysis
HistoryAcquires_mergeWBVar00569602
StatusLive
AffectsGeneWBGene00001557
TranscriptC54E4.3.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC54E4.3.1:c.742+336A>G
Intron_number8/17
ReferenceWBPaper00038208
WBPaper00004703
RemarkPredicted SNP: Psnp=0.9427 VarS=CT
Enzymes. Bristol-specific: [CviRI,Hpy26I,HpyCH4V,HpyF36III,HpyF38II,HpyF44III,HpyF45II,HpyF48III,HpyF49V,HpyF67II,HpyJP26I]. CB4856-specific [none].
[20040130 db] this Locus was previously named snp_C54E4.1
[20040130 db] this Allele was previously named snp_C54E4.1
[20090224 db] original Wicks name : C54E4:18650..19438@278 Psnp=0.9427 VarS=CT
[20090224 db] original Wicks id : yy59f01.s1@228,c,59
[20090224 db] Snip-SNP
MethodSNP_Wicks