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WormBase Tree Display for Variation: WBVar00243789

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Name Class

WBVar00243789EvidencePaper_evidenceWBPaper00004703
NamePublic_nameWBVar00243789
Other_namesnp_C52B9[5]
cewivar00272473
C52B9.5.1:c.646-53C>T
HGVSgCHROMOSOME_X:g.4258557C>T
Sequence_detailsSMapS_parentSequenceC52B9
Flanking_sequencesttttcatatttggcaactgttgcaatgcccgaaatttccaattactgttc
Mapping_targetC52B9
Type_of_mutationSubstitutionCT
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004602From_analysisMillion_mutation_project_reanalysis
WBStrain00022850From_analysisMillion_mutation_project_reanalysis
WBStrain00022878From_analysisMillion_mutation_project_reanalysis
WBStrain00023139From_analysisMillion_mutation_project_reanalysis
WBStrain00027648From_analysisMillion_mutation_project_reanalysis
WBStrain00027660From_analysisMillion_mutation_project_reanalysis
AnalysisSNP_Wicks
Million_mutation_project_reanalysis
StatusLive
AffectsGeneWBGene00005717
TranscriptC52B9.5.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC52B9.5.1:c.646-53C>T
Intron_number5/8
ReferenceWBPaper00004703
RemarkPredicted SNP: Psnp=0.8806 VarS=CT
Enzymes. SNP detectable only by sequencing.
[20040130 db] this Locus was previously named snp_C52B9.5
[20040130 db] this Allele was previously named snp_C52B9.5
[20090224 db] original Wicks name : C52B9:2578..3446@545 Psnp=0.8806 VarS=CT
[20090224 db] original Wicks id : vl29d11.s1@254,t,39
[20090224 db] Snip-SNP
MethodSNP_Wicks