WormBase Tree Display for Variation: WBVar00243789
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WBVar00243789 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00243789 | |||
Other_name | snp_C52B9[5] | ||||
cewivar00272473 | |||||
C52B9.5.1:c.646-53C>T | |||||
HGVSg | CHROMOSOME_X:g.4258557C>T | ||||
Sequence_details | SMap | S_parent | Sequence | C52B9 | |
Flanking_sequences | ttttcatatttggcaactgttgcaa | tgcccgaaatttccaattactgttc | |||
Mapping_target | C52B9 | ||||
Type_of_mutation | Substitution | C | T | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | Million_mutation_project_reanalysis | ||
WBStrain00022850 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00022878 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00023139 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027648 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027660 | From_analysis | Million_mutation_project_reanalysis | |||
Analysis | SNP_Wicks | ||||
Million_mutation_project_reanalysis | |||||
Status | Live | ||||
Affects | Gene | WBGene00005717 | |||
Transcript | C52B9.5.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | C52B9.5.1:c.646-53C>T | ||||
Intron_number | 5/8 | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.8806 VarS=CT | ||||
Enzymes. SNP detectable only by sequencing. | |||||
[20040130 db] this Locus was previously named snp_C52B9.5 | |||||
[20040130 db] this Allele was previously named snp_C52B9.5 | |||||
[20090224 db] original Wicks name : C52B9:2578..3446@545 Psnp=0.8806 VarS=CT | |||||
[20090224 db] original Wicks id : vl29d11.s1@254,t,39 | |||||
[20090224 db] Snip-SNP | |||||
Method | SNP_Wicks |