WormBase Tree Display for Variation: WBVar00243758
expand all nodes | collapse all nodes | view schema
WBVar00243758 | Name | Public_name | WBVar00243758 | ||
---|---|---|---|---|---|
Other_name | snp_C50E10[2] | ||||
cewivar00096841 | |||||
C50E10.2a.2:c.-209-581A>G | |||||
C50E10.2b.1:c.71-581A>G | |||||
C50E10.2a.1:c.-259-308A>G | |||||
C50E10.2c.1:c.11-581A>G | |||||
C50E10.2a.4:c.-209-581A>G | |||||
C50E10.2a.3:c.-259-308A>G | |||||
HGVSg | CHROMOSOME_II:g.12307740T>C | ||||
Sequence_details | SMap | S_parent | Sequence | C50E10 | |
Flanking_sequences | tcttcagcttttctgacatttggtt | caatttgtgcgcaagagagaacttc | |||
Mapping_target | C50E10 | ||||
Type_of_mutation | Substitution | T | C | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain (21) | |||||
Laboratory | AX | ||||
Analysis | SNP_Wicks | ||||
WGS_De_Bono | |||||
Million_mutation_project_reanalysis | |||||
History | Acquires_merge | WBVar01378647 | |||
Status | Live | ||||
Affects | Gene | WBGene00016826 | |||
Transcript | C50E10.2b.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | C50E10.2b.1:c.71-581A>G | ||||
Intron_number | 1/6 | ||||
C50E10.2a.3 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C50E10.2a.3:c.-259-308A>G | ||||
Intron_number | 1/9 | ||||
C50E10.2c.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C50E10.2c.1:c.11-581A>G | ||||
Intron_number | 1/6 | ||||
C50E10.2a.2 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C50E10.2a.2:c.-209-581A>G | ||||
Intron_number | 1/8 | ||||
C50E10.2a.4 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C50E10.2a.4:c.-209-581A>G | ||||
Intron_number | 1/8 | ||||
C50E10.2a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C50E10.2a.1:c.-259-308A>G | ||||
Intron_number | 2/10 | ||||
Reference | WBPaper00004703 | ||||
WBPaper00037807 | |||||
Remark | Predicted SNP: Psnp=0.9427 VarS=CT | ||||
Enzymes. SNP detectable only by sequencing. | |||||
[20040130 db] this Locus was previously named snp_C50E10.2 | |||||
[20040130 db] this Allele was previously named snp_C50E10.2 | |||||
[20090224 db] original Wicks name : C50E10:6206..7142@450 Psnp=0.9427 VarS=CT | |||||
[20090224 db] original Wicks id : eam50e04.s1@392,c,59 | |||||
[20090224 db] Snip-SNP | |||||
Method | SNP_Wicks |