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WormBase Tree Display for Variation: WBVar00243758

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Name Class

WBVar00243758NamePublic_nameWBVar00243758
Other_namesnp_C50E10[2]
cewivar00096841
C50E10.2a.2:c.-209-581A>G
C50E10.2b.1:c.71-581A>G
C50E10.2a.1:c.-259-308A>G
C50E10.2c.1:c.11-581A>G
C50E10.2a.4:c.-209-581A>G
C50E10.2a.3:c.-259-308A>G
HGVSgCHROMOSOME_II:g.12307740T>C
Sequence_detailsSMapS_parentSequenceC50E10
Flanking_sequencestcttcagcttttctgacatttggttcaatttgtgcgcaagagagaacttc
Mapping_targetC50E10
Type_of_mutationSubstitutionTC
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLP
Natural_variant
OriginSpeciesCaenorhabditis elegans
Strain (21)
LaboratoryAX
AnalysisSNP_Wicks
WGS_De_Bono
Million_mutation_project_reanalysis
HistoryAcquires_mergeWBVar01378647
StatusLive
AffectsGeneWBGene00016826
TranscriptC50E10.2b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC50E10.2b.1:c.71-581A>G
Intron_number1/6
C50E10.2a.3VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC50E10.2a.3:c.-259-308A>G
Intron_number1/9
C50E10.2c.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC50E10.2c.1:c.11-581A>G
Intron_number1/6
C50E10.2a.2VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC50E10.2a.2:c.-209-581A>G
Intron_number1/8
C50E10.2a.4VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC50E10.2a.4:c.-209-581A>G
Intron_number1/8
C50E10.2a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC50E10.2a.1:c.-259-308A>G
Intron_number2/10
ReferenceWBPaper00004703
WBPaper00037807
RemarkPredicted SNP: Psnp=0.9427 VarS=CT
Enzymes. SNP detectable only by sequencing.
[20040130 db] this Locus was previously named snp_C50E10.2
[20040130 db] this Allele was previously named snp_C50E10.2
[20090224 db] original Wicks name : C50E10:6206..7142@450 Psnp=0.9427 VarS=CT
[20090224 db] original Wicks id : eam50e04.s1@392,c,59
[20090224 db] Snip-SNP
MethodSNP_Wicks