WormBase Tree Display for Variation: WBVar00243738
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| WBVar00243738 | Evidence | Paper_evidence | WBPaper00004703 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00243738 | |||
| Other_name | snp_C49G9[1] | ||||
| F33E2.2b.1:c.2102del | |||||
| CE23702:p.Ala635ValfsTer15 | |||||
| F33E2.2d.1:c.1904del | |||||
| CE36153:p.Ala708ValfsTer15 | |||||
| CE36154:p.Ala701ValfsTer15 | |||||
| F33E2.2a.1:c.2123del | |||||
| HGVSg | CHROMOSOME_I:g.12567295del | ||||
| Sequence_details | SMap | S_parent | Sequence | C49G9 | |
| Flanking_sequences | ttttgctcgcggagcacgggcgtga | cacagcagcagccgtcttcgagctg | |||
| Mapping_target | C49G9 | ||||
| Type_of_mutation | Deletion | G | |||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| RFLP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
| Analysis | SNP_Wicks | ||||
| Status | Live | ||||
| Affects | Gene | WBGene00001008 | |||
| Transcript | F33E2.2a.1 | VEP_consequence | frameshift_variant | ||
| VEP_impact | HIGH | ||||
| HGVSc | F33E2.2a.1:c.2123del | ||||
| HGVSp | CE36153:p.Ala708ValfsTer15 | ||||
| cDNA_position | 2128 | ||||
| CDS_position | 2123 | ||||
| Protein_position | 708 | ||||
| Exon_number | 11/13 | ||||
| Codon_change | gCt/gt | ||||
| Amino_acid_change | A/X | ||||
| F33E2.2d.1 | VEP_consequence | frameshift_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | F33E2.2d.1:c.1904del | ||||
| HGVSp | CE23702:p.Ala635ValfsTer15 | ||||
| cDNA_position | 1904 | ||||
| CDS_position | 1904 | ||||
| Protein_position | 635 | ||||
| Exon_number | 8/9 | ||||
| Codon_change | gCt/gt | ||||
| Amino_acid_change | A/X | ||||
| F33E2.2b.1 | VEP_consequence | frameshift_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | F33E2.2b.1:c.2102del | ||||
| HGVSp | CE36154:p.Ala701ValfsTer15 | ||||
| cDNA_position | 2107 | ||||
| CDS_position | 2102 | ||||
| Protein_position | 701 | ||||
| Exon_number | 11/13 | ||||
| Codon_change | gCt/gt | ||||
| Amino_acid_change | A/X | ||||
| Reference | WBPaper00004703 | ||||
| Remark | Predicted SNP: Psnp=0.7166 VarD1=G | ||||
| Enzymes. Bristol-specific: [Alw21I,AocII,AspHI,Bbv12I,Bfu1570I,Bka1125I,BmyI,BsaGI,Bsh45I,BsiHKAI,BsmPI,BsoCI,Bsp1286I,BspLS2I,BstZ15I,Hpy8III,HpyF36IV,HpyF46II,HpyF47I,HpyF7II,Mlu40I,MspV281I,NspII,Pph3215I,SduI,TseAI,Uba1362I]. CB4856-specific [none]. | |||||
| [20040130 db] this Locus was previously named snp_C49G9.1 | |||||
| [20040130 db] this Allele was previously named snp_C49G9.1 | |||||
| [20090224 db] original Wicks name : C49G9:4461..5642@569 Psnp=0.7166 VarD1=G | |||||
| [20090224 db] original Wicks id : vd48b07.s1@247,g,59 yw15e04.s1@216,-,35 | |||||
| [20090224 db] Snip-SNP | |||||
| Method | SNP_Wicks |
