WormBase Tree Display for Variation: WBVar00243669
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WBVar00243669 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00243669 | |||
Other_name | snp_C47D2[2] | ||||
C17H11.6d.1:c.296+724_296+725insT | |||||
C17H11.6c.3:c.-50+724_-50+725insT | |||||
C17H11.6c.2:c.-50+724_-50+725insT | |||||
HGVSg | CHROMOSOME_X:g.8202652dup | ||||
Sequence_details | SMap | S_parent | Sequence | C47D2 | |
Flanking_sequences | acgaatttgattttgaaaaaaaaaa | ctgaagccatttggtttcttaaaaa | |||
Mapping_target | C47D2 | ||||
Type_of_mutation | Insertion | A | |||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
Analysis | SNP_Wicks | ||||
Status | Live | ||||
Affects | Gene | WBGene00015926 | |||
Transcript | C17H11.6c.3 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | C17H11.6c.3:c.-50+724_-50+725insT | ||||
Intron_number | 1/17 | ||||
C17H11.6d.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C17H11.6d.1:c.296+724_296+725insT | ||||
Intron_number | 2/16 | ||||
C17H11.6c.2 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C17H11.6c.2:c.-50+724_-50+725insT | ||||
Intron_number | 2/18 | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.7424 VarI1=A | ||||
Enzymes. SNP detectable only by sequencing. | |||||
[20040130 db] this Locus was previously named snp_C47D2.2 | |||||
[20040130 db] this Allele was previously named snp_C47D2.2 | |||||
[20090224 db] original Wicks name : C47D2:1426..2557@668 Psnp=0.7424 VarI1=A | |||||
[20090224 db] original Wicks id : eam84c11.s1@393,a,35 | |||||
Method | SNP_Wicks |