WormBase Tree Display for Variation: WBVar00243598
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WBVar00243598 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00243598 | |||
Other_name | snp_C42C1[4] | ||||
C42C1.10.2:c.408+63dup | |||||
C42C1.19a.1:c.139+713dup | |||||
C42C1.10.1:c.408+63dup | |||||
HGVSg | CHROMOSOME_IV:g.12283719dup | ||||
Sequence_details | SMap | S_parent | Sequence | C42C1 | |
Flanking_sequences | gggatcaaaattttgaaaaaaaaaa | cccataatgttctaaaatctgaaat | |||
Mapping_target | C42C1 | ||||
Type_of_mutation | Insertion | A | |||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
Analysis | SNP_Wicks | ||||
Status | Live | ||||
Affects | Gene | WBGene00302978 | |||
WBGene00016588 | |||||
Transcript | C42C1.10.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | C42C1.10.1:c.408+63dup | ||||
Intron_number | 3/5 | ||||
C42C1.19a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C42C1.19a.1:c.139+713dup | ||||
Intron_number | 2/6 | ||||
C42C1.10.2 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C42C1.10.2:c.408+63dup | ||||
Intron_number | 3/6 | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.4688 VarI1=A | ||||
Enzymes. SNP detectable only by sequencing. | |||||
[20040130 db] this Locus was previously named snp_C42C1.4 | |||||
[20040130 db] this Allele was previously named snp_C42C1.4 | |||||
[20090224 db] original Wicks name : C42C1:24777..25757@241 Psnp=0.4688 VarI1=A | |||||
[20090224 db] original Wicks id : eam32d09.s1@676,a,29 | |||||
Method | SNP_Wicks |