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WormBase Tree Display for Variation: WBVar00243598

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Name Class

WBVar00243598EvidencePaper_evidenceWBPaper00004703
NamePublic_nameWBVar00243598
Other_namesnp_C42C1[4]
C42C1.10.2:c.408+63dup
C42C1.19a.1:c.139+713dup
C42C1.10.1:c.408+63dup
HGVSgCHROMOSOME_IV:g.12283719dup
Sequence_detailsSMapS_parentSequenceC42C1
Flanking_sequencesgggatcaaaattttgaaaaaaaaaacccataatgttctaaaatctgaaat
Mapping_targetC42C1
Type_of_mutationInsertionA
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004602From_analysisSNP_Wicks
AnalysisSNP_Wicks
StatusLive
AffectsGeneWBGene00302978
WBGene00016588
TranscriptC42C1.10.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC42C1.10.1:c.408+63dup
Intron_number3/5
C42C1.19a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC42C1.19a.1:c.139+713dup
Intron_number2/6
C42C1.10.2VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC42C1.10.2:c.408+63dup
Intron_number3/6
ReferenceWBPaper00004703
RemarkPredicted SNP: Psnp=0.4688 VarI1=A
Enzymes. SNP detectable only by sequencing.
[20040130 db] this Locus was previously named snp_C42C1.4
[20040130 db] this Allele was previously named snp_C42C1.4
[20090224 db] original Wicks name : C42C1:24777..25757@241 Psnp=0.4688 VarI1=A
[20090224 db] original Wicks id : eam32d09.s1@676,a,29
MethodSNP_Wicks