WormBase Tree Display for Variation: WBVar00243581
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| WBVar00243581 | Evidence | Paper_evidence | WBPaper00004703 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00243581 | |||
| Other_name | snp_C40H1[3] | ||||
| CE00111:p.Thr287AsnfsTer18 | |||||
| C40H1.3.1:c.857_858insA | |||||
| HGVSg | CHROMOSOME_III:g.9328341dup | ||||
| Sequence_details | SMap | S_parent | Sequence | C40H1 | |
| Flanking_sequences | tctcttcccttaccccacatatgtt | ggcattttatatggatcatcctgaa | |||
| Mapping_target | C40H1 | ||||
| Type_of_mutation | Insertion | T | |||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
| Analysis | SNP_Wicks | ||||
| Status | Live | ||||
| Affects | Gene | WBGene00008039 | |||
| Transcript | C40H1.3.1 | VEP_consequence | frameshift_variant | ||
| VEP_impact | HIGH | ||||
| HGVSc | C40H1.3.1:c.857_858insA | ||||
| HGVSp | CE00111:p.Thr287AsnfsTer18 | ||||
| cDNA_position | 857-858 | ||||
| CDS_position | 857-858 | ||||
| Protein_position | 286 | ||||
| Exon_number | 3/6 | ||||
| Codon_change | cca/ccAa | ||||
| Amino_acid_change | P/PX | ||||
| Reference | WBPaper00004703 | ||||
| Remark | Predicted SNP: Psnp=0.9174 VarI1=T | ||||
| Enzymes. SNP detectable only by sequencing. | |||||
| [20040130 db] this Locus was previously named snp_C40H1.3 | |||||
| [20040130 db] this Allele was previously named snp_C40H1.3 | |||||
| [20090224 db] original Wicks name : C40H1:19132..20041@435 Psnp=0.9174 VarI1=T | |||||
| [20090224 db] original Wicks id : yw06c06.s1@351,t,51 | |||||
| Method | SNP_Wicks |
