WormBase Tree Display for Variation: WBVar00243555
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WBVar00243555 | Name | Public_name | WBVar00243555 | ||
---|---|---|---|---|---|
Other_name | snp_C38C10[1] | ||||
haw144777 | |||||
cewivar00151571 | |||||
C38C10.1.1:c.119+879A>G | |||||
CE00106:p.Asp125= | |||||
C38C10.3.1:c.375T>C | |||||
HGVSg | CHROMOSOME_III:g.9384798A>G | ||||
Sequence_details | SMap | S_parent | Sequence | C38C10 | |
Flanking_sequences | attgttgaatatttccgactttcaa | tcactctccgaagaactcgacggtc | |||
Mapping_target | C38C10 | ||||
Type_of_mutation | Substitution | A | G | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain (18) | |||||
Laboratory | AX | ||||
Person | WBPerson4037 | ||||
Analysis | SNP_Wicks | ||||
WGS_De_Bono | |||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
WGS_Andersen | |||||
History | Acquires_merge | WBVar01447516 | |||
WBVar01332072 | |||||
WBVar01447517 | |||||
WBVar00564642 | |||||
Status | Live | ||||
Affects | Gene | WBGene00008001 | |||
WBGene00006576 | |||||
Transcript | C38C10.1.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | C38C10.1.1:c.119+879A>G | ||||
Intron_number | 2/9 | ||||
C38C10.3.1 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | C38C10.3.1:c.375T>C | ||||
HGVSp | CE00106:p.Asp125= | ||||
cDNA_position | 421 | ||||
CDS_position | 375 | ||||
Protein_position | 125 | ||||
Exon_number | 4/7 | ||||
Codon_change | gaT/gaC | ||||
Amino_acid_change | D | ||||
Reference | WBPaper00038208 | ||||
WBPaper00004703 | |||||
WBPaper00037807 | |||||
Remark | Predicted SNP: Psnp=0.9427 VarS=AG | ||||
Enzymes. SNP detectable only by sequencing. | |||||
[20040130 db] this Locus was previously named snp_C38C10.1 | |||||
[20040130 db] this Allele was previously named snp_C38C10.1 | |||||
[20090224 db] original Wicks name : C38C10:14721..15679@292 Psnp=0.9427 VarS=AG | |||||
[20090224 db] original Wicks id : eam69a04.s1@226,g,59 | |||||
[20090224 db] Snip-SNP | |||||
Method | SNP_Wicks |