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WormBase Tree Display for Variation: WBVar00243555

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Name Class

WBVar00243555NamePublic_nameWBVar00243555
Other_namesnp_C38C10[1]
haw144777
cewivar00151571
C38C10.1.1:c.119+879A>G
CE00106:p.Asp125=
C38C10.3.1:c.375T>C
HGVSgCHROMOSOME_III:g.9384798A>G
Sequence_detailsSMapS_parentSequenceC38C10
Flanking_sequencesattgttgaatatttccgactttcaatcactctccgaagaactcgacggtc
Mapping_targetC38C10
Type_of_mutationSubstitutionAG
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLP
Natural_variant
OriginSpeciesCaenorhabditis elegans
Strain (18)
LaboratoryAX
PersonWBPerson4037
AnalysisSNP_Wicks
WGS_De_Bono
WGS_Yanai
Million_mutation_project_reanalysis
WGS_Andersen
HistoryAcquires_mergeWBVar01447516
WBVar01332072
WBVar01447517
WBVar00564642
StatusLive
AffectsGeneWBGene00008001
WBGene00006576
TranscriptC38C10.1.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC38C10.1.1:c.119+879A>G
Intron_number2/9
C38C10.3.1VEP_consequencesynonymous_variant
VEP_impactLOW
HGVScC38C10.3.1:c.375T>C
HGVSpCE00106:p.Asp125=
cDNA_position421
CDS_position375
Protein_position125
Exon_number4/7
Codon_changegaT/gaC
Amino_acid_changeD
ReferenceWBPaper00038208
WBPaper00004703
WBPaper00037807
RemarkPredicted SNP: Psnp=0.9427 VarS=AG
Enzymes. SNP detectable only by sequencing.
[20040130 db] this Locus was previously named snp_C38C10.1
[20040130 db] this Allele was previously named snp_C38C10.1
[20090224 db] original Wicks name : C38C10:14721..15679@292 Psnp=0.9427 VarS=AG
[20090224 db] original Wicks id : eam69a04.s1@226,g,59
[20090224 db] Snip-SNP
MethodSNP_Wicks