WormBase Tree Display for Variation: WBVar00243298

WBVar00243298 Evidence: Paper_evidence: WBPaper00004703
  Name: Public_name: WBVar00243298
    Other_name (13)
    HGVSg: CHROMOSOME_II:g.5590907dup
  Sequence_details: SMap: S_parent: Sequence: C17G10
    Flanking_sequences: ggtatatgaaggggacattggtttt attggtgtagtcggtgacaagtatc
    Mapping_target: C17G10
    Type_of_mutation: Insertion: T
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00004602 From_analysis: SNP_Wicks
    Analysis: SNP_Wicks
    Status: Live
  Affects: Gene: WBGene00000383
    Transcript: C17G10.4c.1 VEP_consequence: frameshift_variant
        VEP_impact: HIGH
        HGVSc: C17G10.4c.1:c.1700_1701insA
        HGVSp: CE08288:p.Pro569ThrfsTer15
        cDNA_position: 1754-1755
        CDS_position: 1700-1701
        Protein_position: 567
        Exon_number: 6/8
        Codon_change: ata/atAa
        Amino_acid_change: I/IX
      C17G10.4d.1 VEP_consequence: frameshift_variant
        VEP_impact: HIGH
        HGVSc: C17G10.4d.1:c.1700_1701insA
        HGVSp: CE06845:p.Pro569ThrfsTer15
        cDNA_position: 1753-1754
        CDS_position: 1700-1701
        Protein_position: 567
        Exon_number: 6/8
        Codon_change: ata/atAa
        Amino_acid_change: I/IX
      C17G10.4a.1 VEP_consequence: frameshift_variant
        VEP_impact: HIGH
        HGVSc: C17G10.4a.1:c.1700_1701insA
        HGVSp: CE30868:p.Pro569ThrfsTer15
        cDNA_position: 1752-1753
        CDS_position: 1700-1701
        Protein_position: 567
        Exon_number: 6/9
        Codon_change: ata/atAa
        Amino_acid_change: I/IX
      C17G10.4h.1 VEP_consequence: frameshift_variant
        VEP_impact: HIGH
        HGVSc: C17G10.4h.1:c.1742_1743insA
        HGVSp: CE01789:p.Pro583ThrfsTer15
        cDNA_position: 1796-1797
        CDS_position: 1742-1743
        Protein_position: 581
        Exon_number: 7/9
        Codon_change: ata/atAa
        Amino_acid_change: I/IX
      C17G10.4e.1 VEP_consequence: frameshift_variant
        VEP_impact: HIGH
        HGVSc: C17G10.4e.1:c.1742_1743insA
        HGVSp: CE36916:p.Pro583ThrfsTer15
        cDNA_position: 1796-1797
        CDS_position: 1742-1743
        Protein_position: 581
        Exon_number: 7/10
        Codon_change: ata/atAa
        Amino_acid_change: I/IX
      C17G10.4g.1 VEP_consequence: frameshift_variant
        VEP_impact: HIGH
        HGVSc: C17G10.4g.1:c.1742_1743insA
        HGVSp: CE50122:p.Pro583ThrfsTer15
        cDNA_position: 1796-1797
        CDS_position: 1742-1743
        Protein_position: 581
        Exon_number: 7/9
        Codon_change: ata/atAa
        Amino_acid_change: I/IX
  Reference: WBPaper00004703
  Remark: Predicted SNP: Psnp=0.4688 VarI1=T
    Enzymes. SNP detectable only by sequencing.
    [20040130 db] this Locus was previously named snp_C17G10.1
    [20040130 db] this Allele was previously named snp_C17G10.1
    [20090224 db] original Wicks name : C17G10:7838..8796@799 Psnp=0.4688 VarI1=T
    [20090224 db] original Wicks id : eam59e03.s1@90,t,29
  Method: SNP_Wicks