WormBase Tree Display for Variation: WBVar00243286
expand all nodes | collapse all nodes | view schema
WBVar00243286 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00243286 | |||
Other_name | snp_C16C8[5] | ||||
C16C8.13.1:c.-9+6_-9+7insTA | |||||
C16C8.20.1:c.81+6_81+7insTA | |||||
C16C8.13.2:c.-9+6_-9+7insTA | |||||
HGVSg | CHROMOSOME_II:g.3447043_3447044insTA | ||||
Sequence_details | SMap | S_parent | Sequence | C16C8 | |
Flanking_sequences | atacaatgaattcacagaggtgaga | ataataataataatttattacgctc | |||
Mapping_target | C16C8 | ||||
Type_of_mutation | Insertion | TA | |||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
Analysis | SNP_Wicks | ||||
Status | Live | ||||
Affects | Gene | WBGene00015851 | |||
WBGene00195070 | |||||
WBGene00305274 | |||||
WBGene00305273 | |||||
Transcript | C16C8.29 | ||||
C16C8.13.2 | VEP_consequence | splice_region_variant,intron_variant | |||
VEP_impact | LOW | ||||
HGVSc | C16C8.13.2:c.-9+6_-9+7insTA | ||||
Intron_number | 1/5 | ||||
C16C8.28 | |||||
C16C8.20.1 | VEP_consequence | splice_region_variant,intron_variant | |||
VEP_impact | LOW | ||||
HGVSc | C16C8.20.1:c.81+6_81+7insTA | ||||
Intron_number | 2/4 | ||||
C16C8.13.1 | VEP_consequence | splice_region_variant,intron_variant | |||
VEP_impact | LOW | ||||
HGVSc | C16C8.13.1:c.-9+6_-9+7insTA | ||||
Intron_number | 1/5 | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.8956 VarI2=TA | ||||
Enzymes. SNP detectable only by sequencing. | |||||
[20040130 db] this Locus was previously named snp_C16C8.5 | |||||
[20040130 db] this Allele was previously named snp_C16C8.5 | |||||
[20090224 db] original Wicks name : C16C8:23268..24168@277 Psnp=0.8956 VarI2=TA | |||||
[20090224 db] original Wicks id : eam51g03.s1@211,a,44 | |||||
Method | SNP_Wicks |