WormBase Tree Display for Variation: WBVar00243240
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WBVar00243240 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00243240 | |||
Other_name | snp_C14A4[2] | ||||
C14A4.12a.1:c.-92dup | |||||
C14A4.12b.1:c.-92dup | |||||
HGVSg | CHROMOSOME_II:g.10613102dup | ||||
Sequence_details | SMap | S_parent | Sequence | C14A4 | |
Flanking_sequences | tctcaccttttttccacaaaaaaaa | gcgtgtaaatatcaaatatctcatg | |||
Mapping_target | C14A4 | ||||
Type_of_mutation | Insertion | A | |||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
Analysis | SNP_Wicks | ||||
Status | Live | ||||
Affects | Gene | WBGene00007562 | |||
Transcript | C14A4.12b.1 | VEP_consequence | 5_prime_UTR_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | C14A4.12b.1:c.-92dup | ||||
cDNA_position | 60-61 | ||||
Exon_number | 1/15 | ||||
C14A4.12a.1 | VEP_consequence | 5_prime_UTR_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C14A4.12a.1:c.-92dup | ||||
cDNA_position | 27-28 | ||||
Exon_number | 1/16 | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.9221 VarI1=A | ||||
Enzymes. SNP detectable only by sequencing. | |||||
[20040130 db] this Locus was previously named snp_C14A4.2 | |||||
[20040130 db] this Allele was previously named snp_C14A4.2 | |||||
[20090224 db] original Wicks name : C14A4:32873..33664@374 Psnp=0.9221 VarI1=A | |||||
[20090224 db] original Wicks id : vr92c10.s1@350,a,59 | |||||
Method | SNP_Wicks |