WormBase Tree Display for Variation: WBVar00243141
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WBVar00243141 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00243141 | |||
Other_name | snp_C09B7[3] | ||||
cewivar00270830 | |||||
C09B7.1c.1:c.589-429C>T | |||||
C09B7.1b.1:c.589-429C>T | |||||
C09B7.1a.1:c.589-429C>T | |||||
HGVSg | CHROMOSOME_X:g.2677818C>T | ||||
Sequence_details | SMap | S_parent | Sequence | C09B7 | |
Flanking_sequences | ttgaaggacagattttccaactttt | aatgttgaaacttttgtctcgtgct | |||
Mapping_target | C09B7 | ||||
Type_of_mutation | Substitution | C | T | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | Million_mutation_project_reanalysis | ||
WBStrain00022886 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00023139 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027648 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027660 | From_analysis | Million_mutation_project_reanalysis | |||
Analysis | SNP_Wicks | ||||
Million_mutation_project_reanalysis | |||||
Status | Live | ||||
Affects | Gene | WBGene00004780 | |||
Transcript | C09B7.1b.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | C09B7.1b.1:c.589-429C>T | ||||
Intron_number | 3/7 | ||||
C09B7.1c.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C09B7.1c.1:c.589-429C>T | ||||
Intron_number | 2/5 | ||||
C09B7.1a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C09B7.1a.1:c.589-429C>T | ||||
Intron_number | 3/8 | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.9407 VarS=CT | ||||
Enzymes. Bristol-specific: [TspRI]. CB4856-specific [none]. | |||||
[20040130 db] this Locus was previously named snp_C09B7.3 | |||||
[20040130 db] this Allele was previously named snp_C09B7.3 | |||||
[20090224 db] original Wicks name : C09B7:39409..40321@767 Psnp=0.9407 VarS=CT | |||||
[20090224 db] original Wicks id : vc88c12.s1@80,t,53 | |||||
[20090224 db] Snip-SNP | |||||
Method | SNP_Wicks |