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WormBase Tree Display for Variation: WBVar00243141

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Name Class

WBVar00243141EvidencePaper_evidenceWBPaper00004703
NamePublic_nameWBVar00243141
Other_namesnp_C09B7[3]
cewivar00270830
C09B7.1c.1:c.589-429C>T
C09B7.1b.1:c.589-429C>T
C09B7.1a.1:c.589-429C>T
HGVSgCHROMOSOME_X:g.2677818C>T
Sequence_detailsSMapS_parentSequenceC09B7
Flanking_sequencesttgaaggacagattttccaacttttaatgttgaaacttttgtctcgtgct
Mapping_targetC09B7
Type_of_mutationSubstitutionCT
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004602From_analysisMillion_mutation_project_reanalysis
WBStrain00022886From_analysisMillion_mutation_project_reanalysis
WBStrain00023139From_analysisMillion_mutation_project_reanalysis
WBStrain00027648From_analysisMillion_mutation_project_reanalysis
WBStrain00027660From_analysisMillion_mutation_project_reanalysis
AnalysisSNP_Wicks
Million_mutation_project_reanalysis
StatusLive
AffectsGeneWBGene00004780
TranscriptC09B7.1b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC09B7.1b.1:c.589-429C>T
Intron_number3/7
C09B7.1c.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC09B7.1c.1:c.589-429C>T
Intron_number2/5
C09B7.1a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC09B7.1a.1:c.589-429C>T
Intron_number3/8
ReferenceWBPaper00004703
RemarkPredicted SNP: Psnp=0.9407 VarS=CT
Enzymes. Bristol-specific: [TspRI]. CB4856-specific [none].
[20040130 db] this Locus was previously named snp_C09B7.3
[20040130 db] this Allele was previously named snp_C09B7.3
[20090224 db] original Wicks name : C09B7:39409..40321@767 Psnp=0.9407 VarS=CT
[20090224 db] original Wicks id : vc88c12.s1@80,t,53
[20090224 db] Snip-SNP
MethodSNP_Wicks