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WormBase Tree Display for Variation: WBVar00243002

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Name Class

WBVar00243002NamePublic_nameWBVar00243002
Other_namesnp_C04D8[6]
haw144455
cewivar00151338
C04D8.1b.1:c.2287-314T>G
C04D8.1f.1:c.2287-314T>G
C04D8.1a.1:c.2290-314T>G
C04D8.1g.1:c.1204-314T>G
C04D8.1d.1:c.889-314T>G
HGVSgCHROMOSOME_III:g.8512889T>G
Sequence_detailsSMapS_parentSequenceZC21
Flanking_sequencesACCAAAATTTTTGTCTATTTCACCATTCCATACAGGCGTCGCCCAGGAGCCCCGCACAAAAAGGGAGTGAGGAAGAGAGAAAACGAGAAAAGGATAATAA
Mapping_targetZC21
Type_of_mutationSubstitutionTG
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLP
Natural_variant
OriginSpeciesCaenorhabditis elegans
Strain (20)
PersonWBPerson4037
AnalysisSNP_Wicks
WGS_Yanai
Million_mutation_project_reanalysis
HistoryAcquires_mergeWBVar00564320
StatusLive
AffectsGeneWBGene00015418
TranscriptC04D8.1a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC04D8.1a.1:c.2290-314T>G
Intron_number12/19
C04D8.1d.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC04D8.1d.1:c.889-314T>G
Intron_number4/11
C04D8.1f.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC04D8.1f.1:c.2287-314T>G
Intron_number13/20
C04D8.1b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC04D8.1b.1:c.2287-314T>G
Intron_number13/20
C04D8.1g.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC04D8.1g.1:c.1204-314T>G
Intron_number7/14
ReferenceWBPaper00038208
WBPaper00004703
RemarkPredicted SNP: Psnp=0.8928 VarS=GT
Enzymes. Bristol-specific: [AluI,Alw21I,AocII,AspHI,BanII,Bbv12I,Bfu1570I,Bka1125I,BmyI,BpuI,BsaGI,BsaLI,BscMI,Bsh45I,BsiHKAI,BsmPI,BsoCI,Bsp117I,Bsp1286I,Bsp519I,BspLS2I,BstZ15I,BstZ7I,Bsu1854I,BvuI,Cfr48I,CviJI,CviKI,CviLI,CviMI,CviNI,CviOI,CviTI,Ecl136II,Ecl137I,Eco113I,Eco180I,Eco211I,Eco215I,Eco216I,Eco232I,Eco249I,Eco24I,Eco25I,Eco262I,Eco26I,Eco35I,Eco53kI,Eco68I,Eco75KI,EcoICRI,EcoT38I,EcoT88I,EcoT93I,EcoT95I,Ese4I,FriOI,Hpy8III,HpyF36IV,HpyF46II,HpyF47I,HpyF7II,KoxII,MarI,MltI,Mlu40I,MspV281I,MxaI,NasSI,NspII,OmiAI,OmiBI,OtuI,OtuNI,OxaI,PaeHI,Pfl18I,Pph3215I,Ppu20I,Psp124BI,Psp31I,SacI,SacNI,ScoI,SduI,SstI,TseAI,Uba1124I,Uba1142I,Uba1159I,Uba1206I,Uba1263I,Uba1264I,Uba1307I,Uba1329I,Uba1330I,Uba1357I,Uba1362I,Uba1363I,Uba1409I,Uba1421I,Uba1433I,Uba1441I,Uba39I,Uba57I]. CB4856-specific [none].
[20040130 db] this Locus was previously named snp_C04D8.6
[20040130 db] this Allele was previously named snp_C04D8.6
[20090224 db] original Wicks name : C04D8:14918..15948@543 Psnp=0.8928 VarS=GT
[20090224 db] original Wicks id : eam48a01.s1@414,g,32 eam31a12.s1@360,g,38
[20090224 db] Snip-SNP
MethodSNP_Wicks