WormBase Tree Display for Variation: WBVar00243002
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WBVar00243002 | Name | Public_name | WBVar00243002 | ||
---|---|---|---|---|---|
Other_name | snp_C04D8[6] | ||||
haw144455 | |||||
cewivar00151338 | |||||
C04D8.1b.1:c.2287-314T>G | |||||
C04D8.1f.1:c.2287-314T>G | |||||
C04D8.1a.1:c.2290-314T>G | |||||
C04D8.1g.1:c.1204-314T>G | |||||
C04D8.1d.1:c.889-314T>G | |||||
HGVSg | CHROMOSOME_III:g.8512889T>G | ||||
Sequence_details | SMap | S_parent | Sequence | ZC21 | |
Flanking_sequences | ACCAAAATTTTTGTCTATTTCACCATTCCATACAGGCGTCGCCCAGGAGC | CCCGCACAAAAAGGGAGTGAGGAAGAGAGAAAACGAGAAAAGGATAATAA | |||
Mapping_target | ZC21 | ||||
Type_of_mutation | Substitution | T | G | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain (20) | |||||
Person | WBPerson4037 | ||||
Analysis | SNP_Wicks | ||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
History | Acquires_merge | WBVar00564320 | |||
Status | Live | ||||
Affects | Gene | WBGene00015418 | |||
Transcript | C04D8.1a.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | C04D8.1a.1:c.2290-314T>G | ||||
Intron_number | 12/19 | ||||
C04D8.1d.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C04D8.1d.1:c.889-314T>G | ||||
Intron_number | 4/11 | ||||
C04D8.1f.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C04D8.1f.1:c.2287-314T>G | ||||
Intron_number | 13/20 | ||||
C04D8.1b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C04D8.1b.1:c.2287-314T>G | ||||
Intron_number | 13/20 | ||||
C04D8.1g.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C04D8.1g.1:c.1204-314T>G | ||||
Intron_number | 7/14 | ||||
Reference | WBPaper00038208 | ||||
WBPaper00004703 | |||||
Remark | Predicted SNP: Psnp=0.8928 VarS=GT | ||||
Enzymes. Bristol-specific: [AluI,Alw21I,AocII,AspHI,BanII,Bbv12I,Bfu1570I,Bka1125I,BmyI,BpuI,BsaGI,BsaLI,BscMI,Bsh45I,BsiHKAI,BsmPI,BsoCI,Bsp117I,Bsp1286I,Bsp519I,BspLS2I,BstZ15I,BstZ7I,Bsu1854I,BvuI,Cfr48I,CviJI,CviKI,CviLI,CviMI,CviNI,CviOI,CviTI,Ecl136II,Ecl137I,Eco113I,Eco180I,Eco211I,Eco215I,Eco216I,Eco232I,Eco249I,Eco24I,Eco25I,Eco262I,Eco26I,Eco35I,Eco53kI,Eco68I,Eco75KI,EcoICRI,EcoT38I,EcoT88I,EcoT93I,EcoT95I,Ese4I,FriOI,Hpy8III,HpyF36IV,HpyF46II,HpyF47I,HpyF7II,KoxII,MarI,MltI,Mlu40I,MspV281I,MxaI,NasSI,NspII,OmiAI,OmiBI,OtuI,OtuNI,OxaI,PaeHI,Pfl18I,Pph3215I,Ppu20I,Psp124BI,Psp31I,SacI,SacNI,ScoI,SduI,SstI,TseAI,Uba1124I,Uba1142I,Uba1159I,Uba1206I,Uba1263I,Uba1264I,Uba1307I,Uba1329I,Uba1330I,Uba1357I,Uba1362I,Uba1363I,Uba1409I,Uba1421I,Uba1433I,Uba1441I,Uba39I,Uba57I]. CB4856-specific [none]. | |||||
[20040130 db] this Locus was previously named snp_C04D8.6 | |||||
[20040130 db] this Allele was previously named snp_C04D8.6 | |||||
[20090224 db] original Wicks name : C04D8:14918..15948@543 Psnp=0.8928 VarS=GT | |||||
[20090224 db] original Wicks id : eam48a01.s1@414,g,32 eam31a12.s1@360,g,38 | |||||
[20090224 db] Snip-SNP | |||||
Method | SNP_Wicks |