WormBase Tree Display for Variation: WBVar00242999
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WBVar00242999 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00242999 | |||
Other_name | snp_C04D8[3] | ||||
C04D8.1a.1:c.1397-1597dup | |||||
C04D8.1g.1:c.311-1597dup | |||||
C04D8.1b.1:c.1394-1597dup | |||||
C04D8.1f.1:c.1394-1597dup | |||||
HGVSg | CHROMOSOME_III:g.8506033dup | ||||
Sequence_details | SMap | S_parent | Sequence | C04D8 | |
Flanking_sequences | ccacataaaatgactctttcccccc | atttctctatttgtattcagatggc | |||
Mapping_target | C04D8 | ||||
Type_of_mutation | Insertion | C | |||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
Analysis | SNP_Wicks | ||||
Status | Live | ||||
Affects | Gene | WBGene00015418 | |||
Transcript | C04D8.1a.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | C04D8.1a.1:c.1397-1597dup | ||||
Intron_number | 8/19 | ||||
C04D8.1f.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C04D8.1f.1:c.1394-1597dup | ||||
Intron_number | 9/20 | ||||
C04D8.1b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C04D8.1b.1:c.1394-1597dup | ||||
Intron_number | 9/20 | ||||
C04D8.1g.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C04D8.1g.1:c.311-1597dup | ||||
Intron_number | 3/14 | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.9195 VarI1=C | ||||
Enzymes. SNP detectable only by sequencing. | |||||
[20040130 db] this Locus was previously named snp_C04D8.3 | |||||
[20040130 db] this Allele was previously named snp_C04D8.3 | |||||
[20090224 db] original Wicks name : C04D8:8176..9171@431 Psnp=0.9195 VarI1=C | |||||
[20090224 db] original Wicks id : eam32b04.s1@500,c,53 | |||||
Method | SNP_Wicks |