WormBase Tree Display for Variation: WBVar00242886
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WBVar00242886 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00242886 | |||
Other_name | snp_B0524[2] | ||||
cewivar00194617 | |||||
B0524.5.1:c.279+235T>C | |||||
HGVSg | CHROMOSOME_III:g.1893049A>G | ||||
Sequence_details | SMap | S_parent | Sequence | B0524 | |
Flanking_sequences | atcgataattcgtcgaaaaatcgatattttaacggaaagtcgataattcgtcggaaaatcgattattcgtcggaaaatcgataattcttcgaaaaatcgataattcgtcggaaaatcgataatttctcggaaaatcgataatttctcagaaaatcgaaaattgctcggaaaatcgataatttctcagaaaatcgaaaattcgtcggaaaatcgatattttaacggaaagtcgataattcgtcggaaaatcgattattcgtcggaaaatcgataattcttcgaaaaatcgataattcgtcggaaaatcgataatttctcggaaaatcgataatttctcagaaaatcgaaaattgctcggaaaatcgataatttctcagaaaatcgataattcgtcggaaaatcgataattcgtcaataaaaatcgataataggtcggaaaatcgataatttctcggaaaatcgataatttctcagaaaatcgaaaattgctcggaaaatcgataatttctcagaaaatcgataattcgtcggaaaatcgataattcgtcaataaaaatcgataataggtcggaaaatcgataatttctcggaaaatcgataatttctcagaaaatcgaaaattgctcggaaaatcgataatttctcagaaaatcgataattcgtc | gaaaatcgataattcgtcaataaaaatcgagaata | |||
Mapping_target | B0524 | ||||
Type_of_mutation | Substitution | A | G | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | Million_mutation_project_reanalysis | ||
WBStrain00006640 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00008273 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00022930 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00023138 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00023191 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00031113 | From_analysis | Million_mutation_project_reanalysis | |||
Analysis | SNP_Wicks | ||||
Million_mutation_project_reanalysis | |||||
Status | Live | ||||
Affects | Gene | WBGene00015244 | |||
Transcript | B0524.5.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | B0524.5.1:c.279+235T>C | ||||
Intron_number | 3/5 | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.9420 VarS=AG | ||||
Enzymes. SNP detectable only by sequencing. | |||||
[20040130 db] this Locus was previously named snp_B0524.2 | |||||
[20040130 db] this Allele was previously named snp_B0524.2 | |||||
[20090224 db] original Wicks name : B0524:9786..10740@240 Psnp=0.9420 VarS=AG | |||||
[20090224 db] original Wicks id : eam62c06.s1@164,g,56 | |||||
[20090224 db] Snip-SNP | |||||
Method | SNP_Wicks |