WormBase Tree Display for Variation: WBVar00242878

WBVar00242878 Evidence: Paper_evidence: WBPaper00004703
  Name: Public_name: WBVar00242878
    Other_name: snp_B0496[2]
      B0496.3d.1:c.*124dup
      B0496.3a.1:c.*124dup
      B0496.3b.1:c.*124dup
      B0496.3h.2:c.*124dup
      B0496.3h.1:c.*124dup
      B0496.3a.2:c.*124dup
      B0496.3g.1:c.*124dup
    HGVSg: CHROMOSOME_IV:g.7444484dup
  Sequence_details: SMap: S_parent: Sequence: B0496
    Flanking_sequences: accactttctacagttcattttttt gtaaatatcgtatggagaaactatc
    Mapping_target: B0496
    Type_of_mutation: Insertion: T
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00004602 From_analysis: SNP_Wicks
    Analysis: SNP_Wicks
    Status: Live
  Affects: Gene: WBGene00006814
    Transcript: B0496.3h.2 VEP_consequence: 3_prime_UTR_variant
        VEP_impact: MODIFIER
        HGVSc: B0496.3h.2:c.*124dup
        cDNA_position: 4567-4568
        Exon_number: 28/28
      B0496.3a.2 VEP_consequence: 3_prime_UTR_variant
        VEP_impact: MODIFIER
        HGVSc: B0496.3a.2:c.*124dup
        cDNA_position: 4590-4591
        Exon_number: 28/28
      B0496.3h.1 VEP_consequence: 3_prime_UTR_variant
        VEP_impact: MODIFIER
        HGVSc: B0496.3h.1:c.*124dup
        cDNA_position: 4672-4673
        Exon_number: 31/31
      B0496.3b.1 VEP_consequence: 3_prime_UTR_variant
        VEP_impact: MODIFIER
        HGVSc: B0496.3b.1:c.*124dup
        cDNA_position: 4861-4862
        Exon_number: 31/31
      B0496.3d.1 VEP_consequence: 3_prime_UTR_variant
        VEP_impact: MODIFIER
        HGVSc: B0496.3d.1:c.*124dup
        cDNA_position: 4894-4895
        Exon_number: 33/33
      B0496.3g.1 VEP_consequence: 3_prime_UTR_variant
        VEP_impact: MODIFIER
        HGVSc: B0496.3g.1:c.*124dup
        cDNA_position: 4702-4703
        Exon_number: 32/32
      B0496.3a.1 VEP_consequence: 3_prime_UTR_variant
        VEP_impact: MODIFIER
        HGVSc: B0496.3a.1:c.*124dup
        cDNA_position: 5045-5046
        Exon_number: 33/33
  Reference: WBPaper00004703
  Remark: Predicted SNP: Psnp=0.4688 VarI1=T
    Enzymes. SNP detectable only by sequencing.
    [20040130 db] this Locus was previously named snp_B0496.2
    [20040130 db] this Allele was previously named snp_B0496.2
    [20090224 db] original Wicks name : B0496:27660..28483@379 Psnp=0.4688 VarI1=T
    [20090224 db] original Wicks id : vl28f10.s1@299,t,29
  Method: SNP_Wicks