WormBase Tree Display for Variation: WBVar00242873
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WBVar00242873 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00242873 | |||
Other_name | snp_B0495[2] | ||||
CE29948:p.Ala173SerfsTer10 | |||||
B0495.5.2:c.513_514insG | |||||
B0495.5.1:c.513_514insG | |||||
HGVSg | CHROMOSOME_II:g.7697779dup | ||||
Sequence_details | SMap | S_parent | Sequence | B0495 | |
Flanking_sequences | tgaagaagtttgataatttgggctc | gcgttgtttcaaactctctccttct | |||
Mapping_target | B0495 | ||||
Type_of_mutation | Insertion | C | |||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
Analysis | SNP_Wicks | ||||
Status | Live | ||||
Affects | Gene | WBGene00015204 | |||
Transcript | B0495.5.1 | VEP_consequence | frameshift_variant | ||
VEP_impact | HIGH | ||||
HGVSc | B0495.5.1:c.513_514insG | ||||
HGVSp | CE29948:p.Ala173SerfsTer10 | ||||
cDNA_position | 524-525 | ||||
CDS_position | 513-514 | ||||
Protein_position | 171-172 | ||||
Exon_number | 6/9 | ||||
Codon_change | -/G | ||||
Amino_acid_change | -/X | ||||
B0495.5.2 | VEP_consequence | frameshift_variant | |||
VEP_impact | HIGH | ||||
HGVSc | B0495.5.2:c.513_514insG | ||||
HGVSp | CE29948:p.Ala173SerfsTer10 | ||||
cDNA_position | 536-537 | ||||
CDS_position | 513-514 | ||||
Protein_position | 171-172 | ||||
Exon_number | 6/9 | ||||
Codon_change | -/G | ||||
Amino_acid_change | -/X | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.9226 VarI1=C | ||||
Enzymes. Bristol-specific: [Cac8I]. CB4856-specific [none]. | |||||
[20040130 db] this Locus was previously named snp_B0495.2 | |||||
[20040130 db] this Allele was previously named snp_B0495.2 | |||||
[20090224 db] original Wicks name : B0495:6890..7985@502 Psnp=0.9226 VarI1=C | |||||
[20090224 db] original Wicks id : eam63a04.s1@257,c,62 | |||||
[20090224 db] Snip-SNP | |||||
Method | SNP_Wicks |