WormBase Tree Display for Variation: WBVar00242815

WBVar00242815 Evidence: Paper_evidence: WBPaper00004703
  Name: Public_name: WBVar00242815
    Other_name: snp_B0344[1]
      B0344.1:n.689T>C
    HGVSg: CHROMOSOME_X:g.1597786T>C
  Sequence_details: SMap: S_parent: Sequence: B0344
    Flanking_sequences: aaaaacgactccctccagaaatttc cttccctgcatctccctgccgggtc
    Mapping_target: B0344
    Type_of_mutation: Substitution: T C
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP
    Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00004602 From_analysis: SNP_Wicks
    Analysis: SNP_Wicks
    Status: Live
  Affects: Gene: WBGene00023226
    Pseudogene: B0344.1 VEP_consequence: non_coding_transcript_exon_variant
        VEP_impact: MODIFIER
        HGVSc: B0344.1:n.689T>C
        cDNA_position: 689
        Exon_number: 2/2
  Reference: WBPaper00004703
  Remark: Predicted SNP: Psnp=0.9420 VarS=CT
    Enzymes. Bristol-specific: [Bco116I,Bco5I,BcoKI,BcoSI,BcrAI,BseZI,BsrEI,Bst158I,Bsu6I,Eam1104I,EarI,Hpy178II,HpyAII,HpyII,Ksp632I,MboII,NcuI,TceI,Uba1192I,Uba1276I,VpaKutEI,VpaKutFI,VpaO5I]. CB4856-specific [none].
    [20040130 db] this Locus was previously named snp_B0344.1
    [20040130 db] this Allele was previously named snp_B0344.1
    [20090224 db] original Wicks name : B0344:16846..17833@315 Psnp=0.9420 VarS=CT
    [20090224 db] original Wicks id : eam48a10.s1@244,c,56
    [20090224 db] Snip-SNP
  Method: SNP_Wicks