WormBase Tree Display for Variation: WBVar00242790
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| WBVar00242790 | Evidence | Paper_evidence | WBPaper00004703 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00242790 | |||
| Other_name | snp_B0250[2] | ||||
| B0250.12:n.607dup | |||||
| HGVSg | CHROMOSOME_V:g.20467886dup | ||||
| Sequence_details | SMap | S_parent | Sequence | B0250 | |
| Flanking_sequences | tagtgcaaagtatcgaactgactcc | ggagatgctaatactaatattttac | |||
| Mapping_target | B0250 | ||||
| Type_of_mutation | Insertion | C | |||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| RFLP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
| Analysis | SNP_Wicks | ||||
| Status | Live | ||||
| Affects | Gene | WBGene00050927 | |||
| Pseudogene | B0250.12 | VEP_consequence | non_coding_transcript_exon_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | B0250.12:n.607dup | ||||
| cDNA_position | 607-608 | ||||
| Exon_number | 3/4 | ||||
| Reference | WBPaper00004703 | ||||
| Remark | Predicted SNP: Psnp=0.5729 VarI1=C | ||||
| Enzymes. Bristol-specific: [AccIII,Aor13HI,Bba179I,Bbf7411I,BbvAIII,Bca77I,Bla7920I,BsaWI,BseAI,BsiGI,BsiMI,BsiOI,Bsp13I,Bsp228I,Bsp233I,Bsp508I,BspEI,BspH226I,Bst1473I,BstZ1I,BstZ3I,Bsu22I,Bsu23I,CauB3I,Cfr57I,EspHK26I,Hpy188III,HpyCH4VI,HpyF16II,HpyF19III,HpyF22III,HpyF44IV,Kpn2I,MroI,PinBII,PtaI,Tsp507I,Tsp514I,Uba1136I,Uba1279I,Uba1375I,Uba1425I]. CB4856-specific [none]. | |||||
| [20040130 db] this Locus was previously named snp_B0250.2 | |||||
| [20040130 db] this Allele was previously named snp_B0250.2 | |||||
| [20090224 db] original Wicks name : B0250:10643..11646@429 Psnp=0.5729 VarI1=C | |||||
| [20090224 db] original Wicks id : eam43c10.s1@505,c,31 | |||||
| [20090224 db] Snip-SNP | |||||
| Method | SNP_Wicks |
