WormBase Tree Display for Variation: WBVar00242781
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WBVar00242781 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00242781 | |||
Other_name | snp_B0218[1] | ||||
cewivar00207888 | |||||
B0218.6b.1:c.448-167G>T | |||||
B0218.6a.1:c.820-167G>T | |||||
HGVSg | CHROMOSOME_IV:g.8162297C>A | ||||
Sequence_details | SMap | S_parent | Sequence | B0218 | |
Flanking_sequences | cgctttttttagtcatacctttgtc | gactctgtgcagaaattggatcggg | |||
Mapping_target | B0218 | ||||
Type_of_mutation | Substitution | C | A | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | Million_mutation_project_reanalysis | ||
WBStrain00023072 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00023139 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027648 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027660 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027662 | From_analysis | Million_mutation_project_reanalysis | |||
Analysis | SNP_Wicks | ||||
Million_mutation_project_reanalysis | |||||
Status | Live | ||||
Affects | Gene | WBGene00015050 | |||
Transcript | B0218.6b.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | B0218.6b.1:c.448-167G>T | ||||
Intron_number | 5/5 | ||||
B0218.6a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | B0218.6a.1:c.820-167G>T | ||||
Intron_number | 7/8 | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.8002 VarS=AC | ||||
Enzymes. SNP detectable only by sequencing. | |||||
[20040130 db] this Locus was previously named snp_B0218.1 | |||||
[20040130 db] this Allele was previously named snp_B0218.1 | |||||
[20090224 db] original Wicks name : B0218:15081..16051@790 Psnp=0.8002 VarS=AC | |||||
[20090224 db] original Wicks id : yw17d08.s1@111,a,35 | |||||
[20090224 db] Snip-SNP | |||||
Method | SNP_Wicks |