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WormBase Tree Display for Variation: WBVar00242672

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Name Class

WBVar00242672EvidencePaper_evidenceWBPaper00001835
NamePublic_namesc13
Other_nameB0491.2.1:c.908G>A
B0491.2.2:c.908G>A
CE02104:p.Cys303Tyr
HGVSgCHROMOSOME_II:g.11336795C>T
Sequence_detailsSMapS_parentSequenceB0491
Flanking_sequencesagacggaagaccaggaaaggatgccgagtactccagtgcccagacaagtctccaccatcagag
Mapping_targetB0491
Type_of_mutationSubstitutiongaPaper_evidenceWBPaper00001835
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
Strain (17)
LaboratoryBE
StatusLive
AffectsGeneWBGene00005016
TranscriptB0491.2.2 (12)
B0491.2.1 (12)
Interactor (19)
GeneticsInterpolated_map_positionII3.43913
Mapping_dataIn_2_point215
216
452
In_multi_point254
832
833
834
835
846
2219
In_pos_neg_data1324
1329
1334
1350
1373
1379
1411
1427
2157
2387
DescriptionPhenotypeWBPhenotype:0000022Paper_evidenceWBPaper00000906
Curator_confirmedWBPerson712
RemarkLong weak roller as transheterozygote with e1350 but not with Df.Paper_evidenceWBPaper00000906
Curator_confirmedWBPerson712
WBPhenotype:0000501Paper_evidenceWBPaper00000465
WBPaper00000906
Person_evidenceWBPerson261
Curator_confirmedWBPerson712
RemarkStrong roller L4, adult and Dauer. Weak roller as L3.Paper_evidenceWBPaper00000465
Curator_confirmedWBPerson712
Left roller as homozygote and as transheterozygote with other alleles of sqt-1, with the exception of e1350.Paper_evidenceWBPaper00000906
Curator_confirmedWBPerson712
Adults L3 and L4 larvae left-handed rollers. Easy to score (ES3) in adult and late larvae.Person_evidenceWBPerson261
Curator_confirmedWBPerson712
RecessivePaper_evidenceWBPaper00000465
WBPaper00000906
Person_evidenceWBPerson261
Curator_confirmedWBPerson712
EQ_annotationsLife_stageWBls:0000035PATO:0000460Paper_evidenceWBPaper00000465
Person_evidenceWBPerson261
Curator_confirmedWBPerson712
WBls:0000038PATO:0000460Paper_evidenceWBPaper00000465
Person_evidenceWBPerson261
Curator_confirmedWBPerson712
WBls:0000041PATO:0000460Paper_evidenceWBPaper00000465
Curator_confirmedWBPerson712
WBls:0000032PATO:0000460Paper_evidenceWBPaper00000465
Curator_confirmedWBPerson712
Phenotype_assayTemperature16C, 25CPaper_evidenceWBPaper00000465
Curator_confirmedWBPerson712
Ease_of_scoringES3_Easy_to_scorePerson_evidenceWBPerson261
Curator_confirmedWBPerson712
WBPhenotype:0000583Paper_evidenceWBPaper00005747
Curator_confirmedWBPerson2987
RemarkAuthors report "medium dpy" (Table 1)Paper_evidenceWBPaper00005747
Curator_confirmedWBPerson2987
Phenotype_assayGenotypekaIs12 [col-19::gfp]Paper_evidenceWBPaper00005747
Curator_confirmedWBPerson2987
WBPhenotype:0000645Paper_evidenceWBPaper00005747
Curator_confirmedWBPerson2987
RemarkTable 1Paper_evidenceWBPaper00005747
Curator_confirmedWBPerson2987
Phenotype_assayGenotypekaIs12 [col-19::gfp]Paper_evidenceWBPaper00005747
Curator_confirmedWBPerson2987
WBPhenotype:0000961Paper_evidenceWBPaper00005747
Curator_confirmedWBPerson2987
RemarkTable 1Paper_evidenceWBPaper00005747
Curator_confirmedWBPerson2987
Phenotype_assayGenotypekaIs12 [col-19::gfp]Paper_evidenceWBPaper00005747
Curator_confirmedWBPerson2987
WBPhenotype:0001412Paper_evidenceWBPaper00005747
Curator_confirmedWBPerson2987
RemarkAuthors report "abnormal branched ala" (Table 1)Paper_evidenceWBPaper00005747
Curator_confirmedWBPerson2987
Phenotype_assayGenotypekaIs12 [col-19::gfp]Paper_evidenceWBPaper00005747
Curator_confirmedWBPerson2987
WBPhenotype:0001516Paper_evidenceWBPaper00000465
Curator_confirmedWBPerson712
RemarkAlae make 1/2 turn along the length of the animal.Paper_evidenceWBPaper00000465
Curator_confirmedWBPerson712
RecessivePaper_evidenceWBPaper00000465
Curator_confirmedWBPerson712
EQ_annotationsLife_stageWBls:0000041PATO:0000460Paper_evidenceWBPaper00000465
Curator_confirmedWBPerson712
Phenotype_assayTemperature25CPaper_evidenceWBPaper00000465
Curator_confirmedWBPerson712
WBPhenotype:0001517Paper_evidenceWBPaper00005747
Curator_confirmedWBPerson2987
RemarkAuthors report "severe disruption" (Table 1)Paper_evidenceWBPaper00005747
Curator_confirmedWBPerson2987
Phenotype_assayGenotypekaIs12 [col-19::gfp]Paper_evidenceWBPaper00005747
Curator_confirmedWBPerson2987
Phenotype_not_observedWBPhenotype:0000583Paper_evidenceWBPaper00000465
Curator_confirmedWBPerson712
RecessivePaper_evidenceWBPaper00000465
Curator_confirmedWBPerson712
Phenotype_assayTemperature16C, 25CPaper_evidenceWBPaper00000465
Curator_confirmedWBPerson712
WBPhenotype:0001412Paper_evidenceWBPaper00000465
Curator_confirmedWBPerson712
EQ_annotationsLife_stageWBls:0000041PATO:0000460Paper_evidenceWBPaper00000465
Curator_confirmedWBPerson712
Phenotype_assayTemperature25CPaper_evidenceWBPaper00000465
Curator_confirmedWBPerson712
WBPhenotype:0001515Paper_evidenceWBPaper00000465
Curator_confirmedWBPerson712
EQ_annotationsLife_stageWBls:0000041PATO:0000460Paper_evidenceWBPaper00000465
Curator_confirmedWBPerson712
Phenotype_assayTemperature25CPaper_evidenceWBPaper00000465
Curator_confirmedWBPerson712
WBPhenotype:0001517Paper_evidenceWBPaper00000465
Curator_confirmedWBPerson712
EQ_annotationsLife_stageWBls:0000041PATO:0000460Paper_evidenceWBPaper00000465
Curator_confirmedWBPerson712
Phenotype_assayTemperature25CPaper_evidenceWBPaper00000465
Curator_confirmedWBPerson712
WBPhenotype:0001645Paper_evidenceWBPaper00040284
Curator_confirmedWBPerson2987
RemarkTable 1Paper_evidenceWBPaper00040284
Curator_confirmedWBPerson2987
Reference (11)
MethodSubstitution_allele