WormBase Tree Display for Variation: WBVar00242531
expand all nodes | collapse all nodes | view schema
WBVar00242531 | Evidence | Paper_evidence | WBPaper00002847 | |||||
---|---|---|---|---|---|---|---|---|
Name | Public_name | sa229 | ||||||
Other_name | CE50312:p.Asp601Asn | |||||||
Y55D5A.5d.1:c.1801G>A | ||||||||
CE50158:p.Asp572Asn | ||||||||
CE46852:p.Asp648Asn | ||||||||
Y55D5A.5e.1:c.1714G>A | ||||||||
Y55D5A.5c.1:c.1942G>A | ||||||||
Y55D5A.5a.1:c.1942G>A | ||||||||
CE50204:p.Asp648Asn | ||||||||
HGVSg | CHROMOSOME_III:g.3012619C>T | |||||||
Sequence_details | SMap | S_parent | Sequence | Y55D5A | ||||
Flanking_sequences | gggacaaatggtgagaaggcaatctgtgag | atatggcaatcaacgtgagcatcacagcgg | ||||||
Mapping_target | Y55D5A | |||||||
Type_of_mutation | Substitution | g | a | Paper_evidence | WBPaper00002847 | |||
SeqStatus | Sequenced | |||||||
Variation_type | Allele | |||||||
Origin | Species | Caenorhabditis elegans | ||||||
Laboratory | JT | |||||||
Status | Live | |||||||
Affects | Gene | WBGene00000898 | ||||||
Transcript | Y55D5A.5e.1 (12) | |||||||
Y55D5A.5a.1 (12) | ||||||||
Y55D5A.5c.1 (12) | ||||||||
Y55D5A.5d.1 (12) | ||||||||
Genetics | Interpolated_map_position | III | -8.06138 | |||||
Description | Phenotype | WBPhenotype:0000012 | Paper_evidence | WBPaper00001923 | ||||
WBPaper00002847 | ||||||||
Curator_confirmed | WBPerson712 | |||||||
Remark | 38.7% Dauer at 25C (n=225), 0% Dauer at 15C (n=546). | Paper_evidence | WBPaper00001923 | |||||
Curator_confirmed | WBPerson712 | |||||||
This mutation causes moderate to strong dauer-constitutive phenotype, but is not as strong as nonconditional alleles, for example, mg43. | Paper_evidence | WBPaper00002847 | ||||||
Curator_confirmed | WBPerson712 | |||||||
Penetrance | Incomplete | Paper_evidence | WBPaper00001923 | |||||
Curator_confirmed | WBPerson712 | |||||||
Recessive | Paper_evidence | WBPaper00001923 | ||||||
Curator_confirmed | WBPerson712 | |||||||
Temperature_sensitive | Heat_sensitive | 25 | Paper_evidence | WBPaper00001923 | ||||
Curator_confirmed | WBPerson712 | |||||||
Phenotype_assay | Temperature | 15C, 25C | Paper_evidence | WBPaper00001923 | ||||
Curator_confirmed | WBPerson712 | |||||||
Phenotype_not_observed | WBPhenotype:0002212 | Paper_evidence | WBPaper00001923 | |||||
Curator_confirmed | WBPerson712 | |||||||
Reference | WBPaper00001923 | |||||||
WBPaper00002847 | ||||||||
Method | Substitution_allele |