WormBase Tree Display for Variation: WBVar00241633
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| WBVar00241633 | Evidence | Paper_evidence | WBPaper00005585 | ||||
|---|---|---|---|---|---|---|---|
| Name | Public_name | rt58 | |||||
| Other_name | F52C9.8a.4:c.1825C>T | ||||||
| F52C9.8g.1:c.286-1653C>T | |||||||
| F52C9.8a.2:c.1825C>T | |||||||
| F52C9.8b.1:c.1825C>T | |||||||
| F52C9.8a.1:c.1825C>T | |||||||
| CE30998:p.Gln609Ter | |||||||
| F52C9.8a.3:c.1825C>T | |||||||
| F52C9.8c.1:c.286-1653C>T | |||||||
| CE30802:p.Gln609Ter | |||||||
| HGVSg | CHROMOSOME_III:g.5314060C>T | ||||||
| Sequence_details | SMap | S_parent | Sequence | F52C9 | |||
| Flanking_sequences | gttaagccaagagtggctccagtgccgccg | aggttccagtgactccaacgaagccagtaa | |||||
| Mapping_target | F52C9 | ||||||
| Type_of_mutation | Substitution | c | t | Paper_evidence | WBPaper00005585 | ||
| SeqStatus | Sequenced | ||||||
| Variation_type | Allele | ||||||
| Origin | Species | Caenorhabditis elegans | |||||
| Laboratory | HA | ||||||
| Status | Live | ||||||
| Affects | Gene | WBGene00004095 | |||||
| Transcript | F52C9.8a.3 | VEP_consequence | stop_gained | ||||
| VEP_impact | HIGH | ||||||
| HGVSc | F52C9.8a.3:c.1825C>T | ||||||
| HGVSp | CE30802:p.Gln609Ter | ||||||
| cDNA_position | 1841 | ||||||
| CDS_position | 1825 | ||||||
| Protein_position | 609 | ||||||
| Exon_number | 7/13 | ||||||
| Codon_change | Cag/Tag | ||||||
| Amino_acid_change | Q/* | ||||||
| F52C9.8a.2 | VEP_consequence | stop_gained | |||||
| VEP_impact | HIGH | ||||||
| HGVSc | F52C9.8a.2:c.1825C>T | ||||||
| HGVSp | CE30802:p.Gln609Ter | ||||||
| cDNA_position | 1841 | ||||||
| CDS_position | 1825 | ||||||
| Protein_position | 609 | ||||||
| Exon_number | 7/14 | ||||||
| Codon_change | Cag/Tag | ||||||
| Amino_acid_change | Q/* | ||||||
| F52C9.8a.4 | VEP_consequence | stop_gained | |||||
| VEP_impact | HIGH | ||||||
| HGVSc | F52C9.8a.4:c.1825C>T | ||||||
| HGVSp | CE30802:p.Gln609Ter | ||||||
| cDNA_position | 1841 | ||||||
| CDS_position | 1825 | ||||||
| Protein_position | 609 | ||||||
| Exon_number | 7/12 | ||||||
| Codon_change | Cag/Tag | ||||||
| Amino_acid_change | Q/* | ||||||
| F52C9.8c.1 | VEP_consequence | intron_variant | |||||
| VEP_impact | MODIFIER | ||||||
| HGVSc | F52C9.8c.1:c.286-1653C>T | ||||||
| Intron_number | 5/11 | ||||||
| F52C9.8g.1 | VEP_consequence | intron_variant | |||||
| VEP_impact | MODIFIER | ||||||
| HGVSc | F52C9.8g.1:c.286-1653C>T | ||||||
| Intron_number | 5/11 | ||||||
| F52C9.8a.1 | VEP_consequence | stop_gained | |||||
| VEP_impact | HIGH | ||||||
| HGVSc | F52C9.8a.1:c.1825C>T | ||||||
| HGVSp | CE30802:p.Gln609Ter | ||||||
| cDNA_position | 1839 | ||||||
| CDS_position | 1825 | ||||||
| Protein_position | 609 | ||||||
| Exon_number | 7/14 | ||||||
| Codon_change | Cag/Tag | ||||||
| Amino_acid_change | Q/* | ||||||
| F52C9.8b.1 | VEP_consequence | stop_gained | |||||
| VEP_impact | HIGH | ||||||
| HGVSc | F52C9.8b.1:c.1825C>T | ||||||
| HGVSp | CE30998:p.Gln609Ter | ||||||
| cDNA_position | 1845 | ||||||
| CDS_position | 1825 | ||||||
| Protein_position | 609 | ||||||
| Exon_number | 7/15 | ||||||
| Codon_change | Cag/Tag | ||||||
| Amino_acid_change | Q/* | ||||||
| Genetics | Interpolated_map_position | III | -1.83165 | ||||
| Reference | WBPaper00005585 | ||||||
| Method | Substitution_allele |
