WormBase Tree Display for Variation: WBVar00241019
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| WBVar00241019 | Evidence | Paper_evidence | WBPaper00005045 | ||
|---|---|---|---|---|---|
| Name | Public_name | q155 | |||
| Other_name | CE50301:p.Gln85Ter | ||||
| CE27480:p.Gln354Ter | |||||
| Y54E10A.4c.1:c.253C>T | |||||
| Y54E10A.4a.2:c.418C>T | |||||
| Y54E10A.4b.1:c.1060C>T | |||||
| CE27479:p.Gln140Ter | |||||
| Y54E10A.4a.1:c.418C>T | |||||
| HGVSg | CHROMOSOME_I:g.3214195C>T | ||||
| Sequence_details | SMap | S_parent | Sequence | Y54E10A | |
| Flanking_sequences | gttgttcttctcgtcacaatcgatattgat | aagactacggatacccgaaaggagcggctc | |||
| Mapping_target | Y54E10A | ||||
| Type_of_mutation | Substitution | c | t | ||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Laboratory | JK | ||||
| Status | Live | ||||
| Affects | Gene | WBGene00001481 | |||
| Transcript | Y54E10A.4a.1 | VEP_consequence | stop_gained | ||
| VEP_impact | HIGH | ||||
| HGVSc | Y54E10A.4a.1:c.418C>T | ||||
| HGVSp | CE27479:p.Gln140Ter | ||||
| cDNA_position | 1072 | ||||
| CDS_position | 418 | ||||
| Protein_position | 140 | ||||
| Exon_number | 8/11 | ||||
| Codon_change | Caa/Taa | ||||
| Amino_acid_change | Q/* | ||||
| Y54E10A.4c.1 | VEP_consequence | stop_gained | |||
| VEP_impact | HIGH | ||||
| HGVSc | Y54E10A.4c.1:c.253C>T | ||||
| HGVSp | CE50301:p.Gln85Ter | ||||
| cDNA_position | 253 | ||||
| CDS_position | 253 | ||||
| Protein_position | 85 | ||||
| Exon_number | 2/4 | ||||
| Codon_change | Caa/Taa | ||||
| Amino_acid_change | Q/* | ||||
| Y54E10A.4b.1 | VEP_consequence | stop_gained | |||
| VEP_impact | HIGH | ||||
| HGVSc | Y54E10A.4b.1:c.1060C>T | ||||
| HGVSp | CE27480:p.Gln354Ter | ||||
| cDNA_position | 1072 | ||||
| CDS_position | 1060 | ||||
| Protein_position | 354 | ||||
| Exon_number | 8/10 | ||||
| Codon_change | Caa/Taa | ||||
| Amino_acid_change | Q/* | ||||
| Y54E10A.4a.2 | VEP_consequence | stop_gained | |||
| VEP_impact | HIGH | ||||
| HGVSc | Y54E10A.4a.2:c.418C>T | ||||
| HGVSp | CE27479:p.Gln140Ter | ||||
| cDNA_position | 546 | ||||
| CDS_position | 418 | ||||
| Protein_position | 140 | ||||
| Exon_number | 4/7 | ||||
| Codon_change | Caa/Taa | ||||
| Amino_acid_change | Q/* | ||||
| Isolation | Mutagen | EMS | |||
| Genetics | Interpolated_map_position | I | -4.47293 | ||
| Reference | WBPaper00016543 | ||||
| Method | Substitution_allele |
