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WormBase Tree Display for Variation: WBVar00240760

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Name Class

WBVar00240760EvidencePaper_evidenceWBPaper00004703
NamePublic_nameWBVar00240760
Other_namepkP5136
cewivar00264831
Y113G7A.6a.1:c.824+33G>A
Y113G7A.6b.1:c.665+33G>A
Y113G7A.6d.1:c.788+33G>A
Y113G7A.6c.1:c.713+33G>A
HGVSgCHROMOSOME_V:g.20056083C>T
Sequence_detailsSMapS_parentSequenceY113G7A
Flanking_sequencesttttactattccaggtgaaatttttaaatttttagaaattcataataaaa
Mapping_targetY113G7A
Type_of_mutationSubstitutionCT
PCR_productsnp_pkP5136.amp
SeqStatusSequenced
Variation_typeSNP
Confirmed_SNP
RFLPReference_strain_digestDraI[230, 63, 54, 18]
Polymorphic_strain_digestDraI[159, 71, 63, 54, 18]
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004602From_analysisMillion_mutation_project_reanalysis
AnalysisSNP_Wicks
Million_mutation_project_reanalysis
StatusLive
AffectsGeneWBGene00006652
TranscriptY113G7A.6c.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY113G7A.6c.1:c.713+33G>A
Intron_number6/7
Y113G7A.6a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY113G7A.6a.1:c.824+33G>A
Intron_number8/10
Y113G7A.6b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY113G7A.6b.1:c.665+33G>A
Intron_number6/8
Y113G7A.6d.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY113G7A.6d.1:c.788+33G>A
Intron_number7/9
ReferenceWBPaper00004703
MethodSNP_Wicks