WormBase Tree Display for Variation: WBVar00240760
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WBVar00240760 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00240760 | |||
Other_name | pkP5136 | ||||
cewivar00264831 | |||||
Y113G7A.6a.1:c.824+33G>A | |||||
Y113G7A.6b.1:c.665+33G>A | |||||
Y113G7A.6d.1:c.788+33G>A | |||||
Y113G7A.6c.1:c.713+33G>A | |||||
HGVSg | CHROMOSOME_V:g.20056083C>T | ||||
Sequence_details | SMap | S_parent | Sequence | Y113G7A | |
Flanking_sequences | ttttactattccaggtgaaattttt | aaatttttagaaattcataataaaa | |||
Mapping_target | Y113G7A | ||||
Type_of_mutation | Substitution | C | T | ||
PCR_product | snp_pkP5136.amp | ||||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Confirmed_SNP | |||||
RFLP | Reference_strain_digest | DraI | [230, 63, 54, 18] | ||
Polymorphic_strain_digest | DraI | [159, 71, 63, 54, 18] | |||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | Million_mutation_project_reanalysis | ||
Analysis | SNP_Wicks | ||||
Million_mutation_project_reanalysis | |||||
Status | Live | ||||
Affects | Gene | WBGene00006652 | |||
Transcript | Y113G7A.6c.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y113G7A.6c.1:c.713+33G>A | ||||
Intron_number | 6/7 | ||||
Y113G7A.6a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y113G7A.6a.1:c.824+33G>A | ||||
Intron_number | 8/10 | ||||
Y113G7A.6b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y113G7A.6b.1:c.665+33G>A | ||||
Intron_number | 6/8 | ||||
Y113G7A.6d.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y113G7A.6d.1:c.788+33G>A | ||||
Intron_number | 7/9 | ||||
Reference | WBPaper00004703 | ||||
Method | SNP_Wicks |