WormBase Tree Display for Variation: WBVar00240725
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| WBVar00240725 | Name | Public_name | WBVar00240725 | ||
|---|---|---|---|---|---|
| Other_name | pkP5100 | ||||
| haw160816 | |||||
| cewivar00046497 | |||||
| R09A1.3.1:c.378C>T | |||||
| CE18129:p.Ile126= | |||||
| HGVSg | CHROMOSOME_V:g.1025822G>A | ||||
| Sequence_details | SMap | S_parent | Sequence | R09A1 | |
| Flanking_sequences | aaaaaccctcactagaaatatgatt | atctcaatcacacaatccatgacat | |||
| Mapping_target | R09A1 | ||||
| Type_of_mutation | Substitution | G | A | ||
| PCR_product | snp_pkP5100.amp | ||||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Confirmed_SNP | |||||
| RFLP | Reference_strain_digest | AseI | [206, 196] | ||
| Polymorphic_strain_digest | AseI | [402] | |||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00000032 | From_analysis | Million_mutation_project_reanalysis | ||
| WBStrain00004602 | From_analysis | SNP_Wicks | |||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00006622 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022850 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022852 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022856 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022930 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023139 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027648 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027660 | From_analysis | Million_mutation_project_reanalysis | |||
| Person | WBPerson4037 | ||||
| Analysis | SNP_Wicks | ||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar00580681 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00019973 | |||
| Transcript | R09A1.3.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | R09A1.3.1:c.378C>T | ||||
| HGVSp | CE18129:p.Ile126= | ||||
| cDNA_position | 387 | ||||
| CDS_position | 378 | ||||
| Protein_position | 126 | ||||
| Exon_number | 4/8 | ||||
| Codon_change | atC/atT | ||||
| Amino_acid_change | I | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00004703 | |||||
| Method | SNP_Wicks |
