WormBase Tree Display for Variation: WBVar00240605

WBVar00240605 Evidence: Paper_evidence: WBPaper00004703
  Name: Public_name: WBVar00240605
    Other_name: pkP4061
      cewivar00210761
      F52G2.2c.1:c.1218+6G>T
      F52G2.2a.1:c.3924+6G>T
      F52G2.2b.1:c.3354+6G>T
      F52G2.2d.1:c.2580+6G>T
    HGVSg: CHROMOSOME_IV:g.13522867C>A
  Sequence_details: SMap: S_parent: Sequence: F52G2
    Flanking_sequences: tagttttttcgccaaaaaaaaagtc cctaccctctggcaagcgtcaatat
    Mapping_target: F52G2
    Type_of_mutation: Substitution: C A
    PCR_product: snp_pkP4060.amp
    SeqStatus: Sequenced
  Variation_type: SNP
    Confirmed_SNP
    RFLP
    Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00004602 From_analysis: Million_mutation_project_reanalysis
    Analysis: SNP_Wicks
      Million_mutation_project_reanalysis
    Status: Live
  Affects: Gene: WBGene00004681
    Transcript: F52G2.2a.1 VEP_consequence: splice_region_variant,intron_variant
        VEP_impact: LOW
        HGVSc: F52G2.2a.1:c.3924+6G>T
        Intron_number: 20/21
      F52G2.2d.1 VEP_consequence: splice_region_variant,intron_variant
        VEP_impact: LOW
        HGVSc: F52G2.2d.1:c.2580+6G>T
        Intron_number: 13/13
      F52G2.2b.1 VEP_consequence: splice_region_variant,intron_variant
        VEP_impact: LOW
        HGVSc: F52G2.2b.1:c.3354+6G>T
        Intron_number: 17/17
      F52G2.2c.1 VEP_consequence: splice_region_variant,intron_variant
        VEP_impact: LOW
        HGVSc: F52G2.2c.1:c.1218+6G>T
        Intron_number: 5/5
  Reference: WBPaper00004703
  Remark: [RFLP] PCR and sequencing
  Method: SNP_Wicks