WormBase Tree Display for Variation: WBVar00240604
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| WBVar00240604 | Name | Public_name | WBVar00240604 | ||
|---|---|---|---|---|---|
| Other_name | pkP4060 | ||||
| haw155509 | |||||
| cewivar00210760 | |||||
| F52G2.2a.1:c.3924+7G>A | |||||
| F52G2.2d.1:c.2580+7G>A | |||||
| F52G2.2c.1:c.1218+7G>A | |||||
| F52G2.2b.1:c.3354+7G>A | |||||
| HGVSg | CHROMOSOME_IV:g.13522866C>T | ||||
| Sequence_details | SMap | S_parent | Sequence | F52G2 | |
| Flanking_sequences | gtagttttttcgccaaaaaaaaagt | ccctaccctctggcaagcgtcaata | |||
| Mapping_target | F52G2 | ||||
| Type_of_mutation | Substitution | C | T | ||
| PCR_product | snp_pkP4060.amp | ||||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Confirmed_SNP | |||||
| RFLP | Reference_strain_digest | MaeIII | [301] | ||
| Polymorphic_strain_digest | MaeIII | [250, 51] | |||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| Person | WBPerson4037 | ||||
| Analysis | SNP_Wicks | ||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar00575374 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00004681 | |||
| Transcript | F52G2.2a.1 | VEP_consequence | splice_region_variant,intron_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | F52G2.2a.1:c.3924+7G>A | ||||
| Intron_number | 20/21 | ||||
| F52G2.2d.1 | VEP_consequence | splice_region_variant,intron_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | F52G2.2d.1:c.2580+7G>A | ||||
| Intron_number | 13/13 | ||||
| F52G2.2b.1 | VEP_consequence | splice_region_variant,intron_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | F52G2.2b.1:c.3354+7G>A | ||||
| Intron_number | 17/17 | ||||
| F52G2.2c.1 | VEP_consequence | splice_region_variant,intron_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | F52G2.2c.1:c.1218+7G>A | ||||
| Intron_number | 5/5 | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00004703 | |||||
| Method | SNP_Wicks |
