WormBase Tree Display for Variation: WBVar00240599
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| WBVar00240599 | Evidence | Paper_evidence | WBPaper00004703 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00240599 | |||
| Other_name (18) | |||||
| HGVSg | CHROMOSOME_IV:g.1942489C>G | ||||
| Sequence_details | SMap | S_parent | Sequence | F52C12 | |
| Flanking_sequences | catcaagtgaaactagctcaataac | ggagcttctccatcattccattccg | |||
| Mapping_target | F52C12 | ||||
| Type_of_mutation | Substitution | C | G | ||
| PCR_product | snp_pkP4053.amp | ||||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Confirmed_SNP | |||||
| RFLP | Reference_strain_digest | HpaII | [191, 137, 22] | ||
| Polymorphic_strain_digest | HpaII | [328, 22] | |||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | Million_mutation_project_reanalysis | ||
| Analysis | SNP_Wicks | ||||
| Million_mutation_project_reanalysis | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00018681 | |||
| Transcript | F52C12.4d.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | F52C12.4d.1:c.3282C>G | ||||
| HGVSp | CE48799:p.Thr1094= | ||||
| cDNA_position | 3282 | ||||
| CDS_position | 3282 | ||||
| Protein_position | 1094 | ||||
| Exon_number | 18/22 | ||||
| Codon_change | acC/acG | ||||
| Amino_acid_change | T | ||||
| F52C12.4h.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | F52C12.4h.1:c.3276C>G | ||||
| HGVSp | CE48715:p.Thr1092= | ||||
| cDNA_position | 3276 | ||||
| CDS_position | 3276 | ||||
| Protein_position | 1092 | ||||
| Exon_number | 18/22 | ||||
| Codon_change | acC/acG | ||||
| Amino_acid_change | T | ||||
| F52C12.4g.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | F52C12.4g.1:c.3270C>G | ||||
| HGVSp | CE48518:p.Thr1090= | ||||
| cDNA_position | 3276 | ||||
| CDS_position | 3270 | ||||
| Protein_position | 1090 | ||||
| Exon_number | 19/24 | ||||
| Codon_change | acC/acG | ||||
| Amino_acid_change | T | ||||
| F52C12.4c.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | F52C12.4c.1:c.3276C>G | ||||
| HGVSp | CE48639:p.Thr1092= | ||||
| cDNA_position | 3276 | ||||
| CDS_position | 3276 | ||||
| Protein_position | 1092 | ||||
| Exon_number | 18/22 | ||||
| Codon_change | acC/acG | ||||
| Amino_acid_change | T | ||||
| F52C12.4f.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | F52C12.4f.1:c.3237C>G | ||||
| HGVSp | CE48964:p.Thr1079= | ||||
| cDNA_position | 3237 | ||||
| CDS_position | 3237 | ||||
| Protein_position | 1079 | ||||
| Exon_number | 17/21 | ||||
| Codon_change | acC/acG | ||||
| Amino_acid_change | T | ||||
| F52C12.4b.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | F52C12.4b.1:c.3243C>G | ||||
| HGVSp | CE49059:p.Thr1081= | ||||
| cDNA_position | 3250 | ||||
| CDS_position | 3243 | ||||
| Protein_position | 1081 | ||||
| Exon_number | 18/23 | ||||
| Codon_change | acC/acG | ||||
| Amino_acid_change | T | ||||
| F52C12.4a.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | F52C12.4a.1:c.3237C>G | ||||
| HGVSp | CE48580:p.Thr1079= | ||||
| cDNA_position | 3237 | ||||
| CDS_position | 3237 | ||||
| Protein_position | 1079 | ||||
| Exon_number | 17/22 | ||||
| Codon_change | acC/acG | ||||
| Amino_acid_change | T | ||||
| F52C12.4e.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | F52C12.4e.1:c.3231C>G | ||||
| HGVSp | CE48954:p.Thr1077= | ||||
| cDNA_position | 3238 | ||||
| CDS_position | 3231 | ||||
| Protein_position | 1077 | ||||
| Exon_number | 18/23 | ||||
| Codon_change | acC/acG | ||||
| Amino_acid_change | T | ||||
| Reference | WBPaper00004703 | ||||
| Method | SNP_Wicks |
