WormBase Tree Display for Variation: WBVar00240518

WBVar00240518 Evidence: Paper_evidence: WBPaper00004703
  Name: Public_name: WBVar00240518
    Other_name: pkP2152
      Y48E1B.3a.1:c.462-680_462-670del
    HGVSg: CHROMOSOME_II:g.13551245_13551255del
  Sequence_details: SMap: S_parent: Sequence: Y48E1B
    Flanking_sequences: aaaaataaataaaaaagtttctaaaaataccgaaaatccaaattttttcaaaattttcaaaaagtttgcttttaaaactccaaatcttcactattttgcataaatagatgcctaaaaatcg atttttttttaaactttttgacataattttcagatttccagaaaaaaaaattttaagaccaaaaatccaatttatttcggtactccaccttta
    Mapping_target: Y48E1B
    Type_of_mutation: Deletion: attttttttcg
    PCR_product: snp_pkP2152.amp
    SeqStatus: Sequenced
  Variation_type: SNP
    Confirmed_SNP
    RFLP: Reference_strain_digest: ClaI (764, 415)
      Polymorphic_strain_digest: ClaI (1179)
    Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00004602 From_analysis: SNP_Wicks
    Analysis: SNP_Wicks
    Status: Live
  Affects: Gene: WBGene00013002
    Transcript: Y48E1B.3a.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: Y48E1B.3a.1:c.462-680_462-670del
        Intron_number: 5/7
  Reference: WBPaper00004703
  Method: SNP_Wicks