WormBase Tree Display for Variation: WBVar00239323
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| WBVar00239323 | Evidence | Paper_evidence | WBPaper00031936 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Name | Public_name | pk610 | |||||||
| Other_name | pk610df | ||||||||
| R10H10.5.1:c.565_933-276del | |||||||||
| HGVSg | CHROMOSOME_IV:g.10406904_10407864del | ||||||||
| Sequence_details | SMap | S_parent | Sequence | R10H10 | |||||
| Flanking_sequences | aaaacaacaggaataacagaagttttgttt | caaagaccagaaaaagattttttcccgagt | |||||||
| Mapping_target | R10H10 | ||||||||
| Type_of_mutation | Deletion | ||||||||
| SeqStatus | Sequenced | ||||||||
| Variation_type | Allele | ||||||||
| Origin | Species | Caenorhabditis elegans | |||||||
| Strain | WBStrain00028939 | ||||||||
| Laboratory | NL | ||||||||
| Status | Live | ||||||||
| Affects | Gene | WBGene00001669 | |||||||
| Transcript | R10H10.5.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | ||||||
| VEP_impact | HIGH | ||||||||
| HGVSc | R10H10.5.1:c.565_933-276del | ||||||||
| cDNA_position | 576-? | ||||||||
| CDS_position | 565-? | ||||||||
| Protein_position | 189-? | ||||||||
| Intron_number | 5-7/8 | ||||||||
| Exon_number | 5-7/9 | ||||||||
| Isolation | Mutagen | EMS | |||||||
| Genetics | Interpolated_map_position | IV | 4.5874 | ||||||
| Mapping_data | In_multi_point | 4373 | |||||||
| Description | Phenotype (19) | ||||||||
| Phenotype_not_observed | WBPhenotype:0001414 | Paper_evidence | WBPaper00003465 | ||||||
| Curator_confirmed | WBPerson291 | ||||||||
| WBPhenotype:0001434 | Paper_evidence | WBPaper00003465 | |||||||
| Curator_confirmed | WBPerson291 | ||||||||
| WBPhenotype:0001765 | Paper_evidence | WBPaper00031936 | |||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| Remark | Animals with mutations in individual G protein subunits respond normally to CO2 | Paper_evidence | WBPaper00031936 | ||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| EQ_annotations | Life_stage | WBls:0000057 | PATO:0000460 | Paper_evidence | WBPaper00031936 | ||||
| Curator_confirmed | WBPerson2021 | ||||||||
| Phenotype_assay | Treatment | 10% CO2 | Paper_evidence | WBPaper00031936 | |||||
| Curator_confirmed | WBPerson2021 | ||||||||
| WBPhenotype:0002535 | Paper_evidence | WBPaper00003465 | |||||||
| Curator_confirmed | WBPerson291 | ||||||||
| Reference | WBPaper00043908 | ||||||||
| WBPaper00031936 | |||||||||
| WBPaper00003465 | |||||||||
| WBPaper00030770 | |||||||||
| Method | Deletion_allele |
