WormBase Tree Display for Variation: WBVar00239157

WBVar00239157 Name: Public_name: pk15
    Other_name: pk15te
      T19C4.6a.1:c.119-58_969del
    HGVSg: CHROMOSOME_V:g.11174672_11176781del
  Sequence_details: SMap: S_parent: Sequence: T19C4
    Flanking_sequences: tgcaccatggaaatgcgattactaatcaaa tgtcatcacacttgtgctacagacacacaa
    Mapping_target: T19C4
    Type_of_mutation: Insertion
      Deletion
    SeqStatus: Sequenced
  Variation_type: Allele
    Transposon_insertion: Tc1
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00028898
    Laboratory: NL
    Status: Live
  Affects: Gene: WBGene00014521
      WBGene00001663
      WBGene00045170
      WBGene00196066
      WBGene00011839
      WBGene00196822
    Transcript: T19C4.17 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Exon_number: 1/1
      T19C4.6b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-813
        CDS_position: ?-813
        Protein_position: ?-271
        Intron_number: 1-6/6
        Exon_number: 1-7/7
      T19C4.t1 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Exon_number: 1/1
      T19C4.12 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Exon_number: 1/1
      T19C4.5a.1 VEP_consequence: 3_prime_UTR_variant
        VEP_impact: MODIFIER
        cDNA_position: 1412-?
        Exon_number: 8/8
      T19C4.19 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Exon_number: 1/1
      T19C4.6a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T19C4.6a.1:c.119-58_969del
        cDNA_position: ?-1087
        CDS_position: ?-969
        Protein_position: ?-323
        Intron_number: 2-8/9
        Exon_number: 3-9/10
      T19C4.5b.1 VEP_consequence: 3_prime_UTR_variant
        VEP_impact: MODIFIER
        cDNA_position: 1945-?
        Exon_number: 7/7
    Interactor: WBInteraction000502743
  Isolation: Mutagen: Tc1
    Reverse_genetics: Tc1-derived deletion
    Derived_from_variation: WBVar00239143
  Genetics: Interpolated_map_position: V 2.96778
  Description: Phenotype (11)
    Phenotype_not_observed: WBPhenotype:0000677 Paper_evidence: WBPaper00003465
        Curator_confirmed: WBPerson291
        Remark: No defects when tested for response to glucose, CuSo4, 4M fructose, SDS and various volatile chemicals. Paper_evidence: WBPaper00003465
            Curator_confirmed: WBPerson291
        Affected_by: Molecule: WBMol:00005569 Paper_evidence: WBPaper00003465
              Curator_confirmed: WBPerson291
            WBMol:00003937 Paper_evidence: WBPaper00003465
              Curator_confirmed: WBPerson291
            WBMol:00002899 Paper_evidence: WBPaper00003465
              Curator_confirmed: WBPerson291
            WBMol:00003977 Paper_evidence: WBPaper00003465
              Curator_confirmed: WBPerson291
      WBPhenotype:0001414 Paper_evidence: WBPaper00003465
        Curator_confirmed: WBPerson291
      WBPhenotype:0001765 Paper_evidence: WBPaper00031936
        Curator_confirmed: WBPerson2021
        Remark: Animals with mutations in individual G protein subunits respond normally to CO2 Paper_evidence: WBPaper00031936
            Curator_confirmed: WBPerson2021
        EQ_annotations: Life_stage: WBls:0000057 PATO:0000460 Paper_evidence: WBPaper00031936
                Curator_confirmed: WBPerson2021
        Phenotype_assay: Treatment: 10% CO2 Paper_evidence: WBPaper00031936
              Curator_confirmed: WBPerson2021
      WBPhenotype:0002055 Paper_evidence: WBPaper00036207
        Curator_confirmed: WBPerson712
        Remark: Photocurrents appeared to be normal. Paper_evidence: WBPaper00036207
            Curator_confirmed: WBPerson712
      WBPhenotype:0002212 Paper_evidence: WBPaper00003465
        Curator_confirmed: WBPerson291
  Reference: WBPaper00001784
    WBPaper00043908
    WBPaper00031936
    WBPaper00003465
    WBPaper00036207
  Remark: Insertion is a tc1 element
  Method: Transposon_insertion