WormBase Tree Display for Variation: WBVar00236240
expand all nodes | collapse all nodes | view schema
| WBVar00236240 | Name | Public_name | WBVar00236240 | ||
|---|---|---|---|---|---|
| Other_name | pas48016 | ||||
| Y55D5A.5c.1:c.162-149del | |||||
| Y55D5A.5d.1:c.21-149del | |||||
| Y55D5A.5a.1:c.162-149del | |||||
| HGVSg | CHROMOSOME_III:g.3019822del | ||||
| Sequence_details | SMap | S_parent | Sequence | Y55D5A | |
| Flanking_sequences | ttagagcaatttttttctgtaaaaaaattttacataccgttctacgccgcgtccgcgaatttttgacaagtcgaagccgtctcattgtgatgtgctcgtcgtcgtggtgattgccgtcgacaatatcgtgctccgtggcacgcgacgagcttctgaaagattcagaatatgttttcgttttttttttcgaaaatttgaatattcgagaaaaacacgaattttcctgacaaaatgacgattcaaaaaatgcagaaaatgacaaaattcagaaaaatcgacagctttttggcaagattgtcg | ttttttttcgcgtttttcggtgaaaaacaacgatttttagcgaaaatttttttgatctccggaaacggggcaatttccaaaaaccgaaatcgattcgttgaaaaacgccgatttttgatctgaaggaaaaacccgaaaatcgaaaatctcaattgtcaaccaatcagcgtcgttagccacgccccttgcgcaacgctgattggtccatttttcggtaacgaatttcgaatctaaaaatcgaggaactaaaaaaaaatattgacttttttccaattctgagaaacggagcattattcaat | |||
| Mapping_target | Y55D5A | ||||
| Type_of_mutation | Deletion | T | |||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004604 | From_analysis | WGS_Pasadena_Quinlan | ||
| Person | WBPerson6900 | ||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Status | Live | ||||
| Affects | Gene | WBGene00000898 | |||
| Transcript | Y55D5A.5a.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y55D5A.5a.1:c.162-149del | ||||
| Intron_number | 3/18 | ||||
| Y55D5A.5c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y55D5A.5c.1:c.162-149del | ||||
| Intron_number | 4/20 | ||||
| Y55D5A.5d.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y55D5A.5d.1:c.21-149del | ||||
| Intron_number | 1/15 | ||||
| Method | WGS_Pasadena_Quinlan |
