WormBase Tree Display for Variation: WBVar00236226
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| WBVar00236226 | Name | Public_name | WBVar00236226 | ||
|---|---|---|---|---|---|
| Other_name | pas48002 | ||||
| C09D1.1o.1:c.50+244del | |||||
| C09D1.1e.1:c.50+244del | |||||
| C09D1.1a.1:c.50+244del | |||||
| C09D1.1m.1:c.50+244del | |||||
| C09D1.1f.1:c.50+244del | |||||
| C09D1.1k.1:c.50+244del | |||||
| C09D1.1b.1:c.50+244del | |||||
| C09D1.1n.1:c.50+244del | |||||
| C09D1.1l.1:c.50+244del | |||||
| HGVSg | CHROMOSOME_I:g.4036186del | ||||
| Sequence_details | SMap | S_parent | Sequence | C09D1 | |
| Flanking_sequences | taccatcatggctagtcgacgccaaaagcagttcgatcggaagtacagctcctatcggtaggtttggagattctggagctgaaaaaaccaattttttgaatttctgatagatttaactattcagaattttctctttttctactaagcctactttccccagcgtaccgtactctaaattgcgaaattaactttctttattatcaccaccgccacgtgacgcatatgccacttgaactgaaaccaacagtttgtttgcacataagtctcaagatccggaatgttctgcggtattcctaagag | aaaaaaaacaaagaaaaattatttgagaaaatttcggaacgccaagaatgaaaaattgtctaattggttaccgcgggttactgttgttaaacaacttttttggaattttttaatgcaaaatctcgataggtttgcaaaaagtacccaaaatcaggaagaattgagagtgttaaaaattttttaaacaaaaattaaatacaaattgtgcattgaaattttgaaatatattttttaaaaacctcacgactagaaattgtaatgtttgaatatcgtttttttaaataattgttcggtttgga | |||
| Mapping_target | C09D1 | ||||
| Type_of_mutation | Deletion | A | |||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004604 | From_analysis | WGS_Pasadena_Quinlan | ||
| Person | WBPerson6900 | ||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Status | Live | ||||
| Affects | Gene | WBGene00006820 | |||
| Transcript | C09D1.1b.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | C09D1.1b.1:c.50+244del | ||||
| Intron_number | 1/48 | ||||
| C09D1.1o.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C09D1.1o.1:c.50+244del | ||||
| Intron_number | 1/32 | ||||
| C09D1.1k.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C09D1.1k.1:c.50+244del | ||||
| Intron_number | 1/46 | ||||
| C09D1.1l.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C09D1.1l.1:c.50+244del | ||||
| Intron_number | 1/32 | ||||
| C09D1.1n.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C09D1.1n.1:c.50+244del | ||||
| Intron_number | 1/46 | ||||
| C09D1.1a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C09D1.1a.1:c.50+244del | ||||
| Intron_number | 2/35 | ||||
| C09D1.1e.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C09D1.1e.1:c.50+244del | ||||
| Intron_number | 1/31 | ||||
| C09D1.1f.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C09D1.1f.1:c.50+244del | ||||
| Intron_number | 1/45 | ||||
| C09D1.1m.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C09D1.1m.1:c.50+244del | ||||
| Intron_number | 1/47 | ||||
| Method | WGS_Pasadena_Quinlan |
