WormBase Tree Display for Variation: WBVar00231102
expand all nodes | collapse all nodes | view schema
| WBVar00231102 | Name | Public_name | WBVar00231102 | ||
|---|---|---|---|---|---|
| Other_name | pas42878 | ||||
| haw135510 | |||||
| cewivar00097992 | |||||
| Y48C3A.5d.1:c.504+2156A>G | |||||
| Y48C3A.5b.1:c.639+2156A>G | |||||
| Y48C3A.5a.1:c.639+2156A>G | |||||
| Y48C3A.4b.1:c.771-417T>C | |||||
| Y48C3A.4a.1:c.762-411T>C | |||||
| HGVSg | CHROMOSOME_II:g.13281924A>G | ||||
| Sequence_details | SMap | S_parent | Sequence | Y48C3A | |
| Flanking_sequences | cgaaccacaatctcagtatttgggggacctgagactacaaaccattttatgggcggagtctacaagccacgcctattttatgggcggagtctacaaggcacgcctattttgtgggaggagtctacaagccacgcctattttttgggcggagtctgcaagtcacgcctatttcatggacgaagactacaagccacgcctattttatgggcggagagtacaagccacgtctattttatgggcggggtctacaaggcgcgtctatttcacgggcggagcctacaagccacgcccattttttgg | cggagactacaagacacgcctatttcatgggcggagtctacaagccacgcccgttttgtggacggagactacaaatcacgcctattttatgggcagagtctgcaaggcgcgcatattttatgggcggagcctgcaagccacgcctattttatgggtggagtctacaagccacgcctattttatgggcggagtctagaacgcacgcccatttctaacataggggctttatttaagattcatttcgaaacttggtttgaatttttgtttaaagcagtatagtatgtgaaaaagagccaaatt | |||
| Mapping_target | Y48C3A | ||||
| Type_of_mutation | Substitution | A | G | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (30) | |||||
| Laboratory | AX | ||||
| Person | WBPerson6900 | ||||
| WBPerson4037 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar01249780 | |||
| WBVar01316359 | |||||
| WBVar00555375 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00012989 | |||
| WBGene00012988 | |||||
| Transcript | Y48C3A.5d.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y48C3A.5d.1:c.504+2156A>G | ||||
| Intron_number | 4/9 | ||||
| Y48C3A.4b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y48C3A.4b.1:c.771-417T>C | ||||
| Intron_number | 4/6 | ||||
| Y48C3A.5b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y48C3A.5b.1:c.639+2156A>G | ||||
| Intron_number | 4/11 | ||||
| Y48C3A.5a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y48C3A.5a.1:c.639+2156A>G | ||||
| Intron_number | 4/10 | ||||
| Y48C3A.4a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y48C3A.4a.1:c.762-411T>C | ||||
| Intron_number | 4/6 | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00037807 | |||||
| Method | WGS_Pasadena_Quinlan |
