WormBase Tree Display for Variation: WBVar00227856
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| WBVar00227856 | Evidence | Paper_evidence | WBPaper00040707 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00227856 | |||
| Other_name | pas39632 | ||||
| cewivar00093378 | |||||
| M176.6b.1:c.1101-13T>A | |||||
| M176.6a.1:c.1281-13T>A | |||||
| HGVSg | CHROMOSOME_II:g.9431694A>T | ||||
| Sequence_details | SMap | S_parent | Sequence | M176 | |
| Flanking_sequences | catctttattcaaaagccaaactaaaatagaaaaataaaaaaagccattagtctctccgaatccaatcctctaatttgctctgtcgttccgcttctgatttcagcgttttttgaatttgttccagaagctgaaatttaaaaaaatcatatttaaaataacttgaaatattttttaatcttacgttagtagcagatacactcaaatgttcttcgaagaattccacacacttggagaagctgggtcgaaatgttgcatcgaaattccaaaattgtttcattcgatcgtacctaaattttttt | aaagttttattctagaagtttgagtttcccagcgattgattatgctaacattttaggatgacaatactgtggcattggaagttgatttccctgaacaacatgctcaaaaacatcactgttggatacatttgaatatggtaattctcccaatgagaacatttcataaagactaacaccatacgaccacacatccgatttttctgtgcattttccttctctcataacttctggagccatccatctagcaggcataggagttcctacacctttcgttattctgaaaattttatgtaatgttta | |||
| Mapping_target | M176 | ||||
| Type_of_mutation | Substitution | A | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (36) | |||||
| Laboratory | QX | ||||
| Person | WBPerson6900 | ||||
| WBPerson1730 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Million_mutation_project_reanalysis | |||||
| WGS_Andersen | |||||
| History | Acquires_merge | WBVar01439088 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00002199 | |||
| Transcript | M176.6b.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | M176.6b.1:c.1101-13T>A | ||||
| Intron_number | 7/9 | ||||
| M176.6a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | M176.6a.1:c.1281-13T>A | ||||
| Intron_number | 8/10 | ||||
| Reference | WBPaper00040707 | ||||
| Method | WGS_Pasadena_Quinlan |
