WormBase Tree Display for Variation: WBVar00226846
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| WBVar00226846 | Evidence | Paper_evidence | WBPaper00005369 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00226846 | |||
| Other_name | pas38622 | ||||
| uCE5-2966 | |||||
| cewivar00051005 | |||||
| C14B4.2.2:c.498T>C | |||||
| CE40249:p.Cys166= | |||||
| C14B4.2.1:c.498T>C | |||||
| HGVSg | CHROMOSOME_V:g.19348667A>G | ||||
| Sequence_details | SMap | S_parent | Sequence | C14B4 | |
| Flanking_sequences | gccgtaacttggctcaaagtgctccaaataaaaaacgaaccggtttttcagaatttcctcaaaattctaaactgcctagaccctcatattgtgaaattcaaaaaatagtgttttcatggctcaactgggtaagcagatggttgacagttaactggtcaggggttcgagtcacgccagggtcaaaaatttttttcttgattaattttatgaaaaattaccttcaggagtctcccttctcagatttttcgccgtttccgcatcttcccttgggaaaattcttccatcattttgcaatttccg | catatcgacttaaaatcatcagtcgacaataaagcttccgtagaaatcacaatattctgagaatgcacactcagtgagccggagcacgtgatttttgcgtaaacgtgcatagtacctacagtactctctagggtcaaattatgggcttttaggattcccgtgacttccagatttgttccggcaattgtcaactaaaaattaaggcgatttttaatatttttggcctaaaatttttacatctggaattttggtgttgatctccttcacagttgtcttgatttccttctcgtggcccaggcc | |||
| Mapping_target | C14B4 | ||||
| Type_of_mutation | Substitution | A | G | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (29) | |||||
| Person | WBPerson6900 | ||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Million_mutation_project_reanalysis | |||||
| SNP_Swan | |||||
| History | Acquires_merge | WBVar00273456 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00007583 | |||
| Transcript | C14B4.2.2 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | C14B4.2.2:c.498T>C | ||||
| HGVSp | CE40249:p.Cys166= | ||||
| cDNA_position | 511 | ||||
| CDS_position | 498 | ||||
| Protein_position | 166 | ||||
| Exon_number | 5/18 | ||||
| Codon_change | tgT/tgC | ||||
| Amino_acid_change | C | ||||
| C14B4.2.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | C14B4.2.1:c.498T>C | ||||
| HGVSp | CE40249:p.Cys166= | ||||
| cDNA_position | 574 | ||||
| CDS_position | 498 | ||||
| Protein_position | 166 | ||||
| Exon_number | 6/19 | ||||
| Codon_change | tgT/tgC | ||||
| Amino_acid_change | C | ||||
| Reference | WBPaper00005369 | ||||
| Method | WGS_Pasadena_Quinlan |
