WormBase Tree Display for Variation: WBVar00226294
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| WBVar00226294 | Name | Public_name | WBVar00226294 | ||
|---|---|---|---|---|---|
| Other_name | pas38070 | ||||
| cewivar00092608 | |||||
| F22B5.11:n.127A>G | |||||
| F22B5.4.1:c.-1-523T>C | |||||
| F22B5.12:n.55T>C | |||||
| HGVSg | CHROMOSOME_II:g.8451604T>C | ||||
| Sequence_details | SMap | S_parent | Sequence | F22B5 | |
| Flanking_sequences | ttcggataaaatcaacgtcactcattttcgtgaaaaccaaaaaatttacagtcatccttttgaatagtgcctccaagatacaaccttcaatatttcattgaatgcctaataacacttggagcatcaattttgtgtgtatttaatttaggtcaggtacaccaaagtagatatatatctcaaaataagcagctcattcttgacctttacgatctattcccaaatgcattgtacactccacctctctattcctctgtctctttatgtacataggcaaactgccgggcacaagcgggcttcttc | cgcacccgcgcgcgcgcagcagtgtgcatgcatcgtctcgttcggcacgtagtcgccacgtcctctcagtcttaaagtcacacccacatatgctactcgcgcccacaatactcacccttctactcccatattttttagaggttggcgtctcatgacactcgtatttctttggctctaatgagaaatggggtcggtgatcctattcttgaagttggctcactccttaatttattttatatcctactagaatctaaattaattttatgctaaaatgtttccaaatgttctgtagaggaacaa | |||
| Mapping_target | F22B5 | ||||
| Type_of_mutation | Substitution | T | C | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00000034 | From_analysis | Million_mutation_project_reanalysis | ||
| WBStrain00004599 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00004604 | From_analysis | WGS_Pasadena_Quinlan | |||
| WBStrain00006625 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023139 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027648 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027652 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027660 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027662 | From_analysis | Million_mutation_project_reanalysis | |||
| Person | WBPerson6900 | ||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Million_mutation_project_reanalysis | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00009042 | |||
| WBGene00201839 | |||||
| WBGene00196712 | |||||
| Transcript | F22B5.11 | VEP_consequence | non_coding_transcript_exon_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | F22B5.11:n.127A>G | ||||
| cDNA_position | 127 | ||||
| Exon_number | 1/1 | ||||
| F22B5.12 | VEP_consequence | non_coding_transcript_exon_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F22B5.12:n.55T>C | ||||
| cDNA_position | 55 | ||||
| Exon_number | 1/1 | ||||
| F22B5.4.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F22B5.4.1:c.-1-523T>C | ||||
| Intron_number | 1/4 | ||||
| Method | WGS_Pasadena_Quinlan |
