WormBase Tree Display for Variation: WBVar00225877
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WBVar00225877 | Name | Public_name | WBVar00225877 | ||
---|---|---|---|---|---|
Other_name | pas37653 | ||||
uCE2-1759 | |||||
haw131633 | |||||
cewivar00091947 | |||||
F18A1.3d.1:c.67-127C>A | |||||
F18A1.3l.1:c.67-127C>A | |||||
F18A1.3a.1:c.67-127C>A | |||||
F18A1.3b.1:c.67-127C>A | |||||
F18A1.3i.1:c.67-127C>A | |||||
F18A1.3c.1:c.67-127C>A | |||||
HGVSg | CHROMOSOME_II:g.7680924C>A | ||||
Sequence_details | SMap | S_parent | Sequence | F18A1 | |
Flanking_sequences | atttcagtagtatgataatatcaattcaaatttatttggaaacccctcataaaaacatcacgttgtagatagttcataatatcaattagttatgaatgtattatctccaattttttttctaaatttaatcactgccaagttcaaatatcctcaagatattttaacacctcatccttattttctaatatcttttatccgactcaccagtattttctctttctttctctcgtattcgctcaccttgatcatctacagctcttaccgtaactccgcccctactccgctccacccctatacgcg | tcacgcacaaacccgcattcagtggccttcagcctcggagcgctctacctgcgctctcatgtgaaccaacattcttgtttgagctccttctttttcttgtattttttttaatattctgaatttcaggtgaaaaagaatttcgaacgtgtctcgctgctcacacgtctcgaagatcacccgtatcttcgtgatgatcaagatgtcgttcaagacgatacacagtctcaaggaaccgatggaatgcttcttcagctcaatgatgaggaacgacaaaggctaatgaagatgataagcacacct | |||
Mapping_target | F18A1 | ||||
Type_of_mutation | Substitution | C | A | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain (19) | |||||
Laboratory | AX | ||||
Person | WBPerson6900 | ||||
WBPerson4037 | |||||
Analysis | WGS_Pasadena_Quinlan | ||||
WGS_De_Bono | |||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
SNP_Swan | |||||
History | Acquires_merge | WBVar00551498 | |||
WBVar01373709 | |||||
WBVar00268831 | |||||
Status | Live | ||||
Affects | Gene | WBGene00003044 | |||
Transcript | F18A1.3l.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | F18A1.3l.1:c.67-127C>A | ||||
Intron_number | 2/6 | ||||
F18A1.3b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F18A1.3b.1:c.67-127C>A | ||||
Intron_number | 2/6 | ||||
F18A1.3a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F18A1.3a.1:c.67-127C>A | ||||
Intron_number | 2/5 | ||||
F18A1.3c.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F18A1.3c.1:c.67-127C>A | ||||
Intron_number | 2/4 | ||||
F18A1.3i.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F18A1.3i.1:c.67-127C>A | ||||
Intron_number | 2/6 | ||||
F18A1.3d.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F18A1.3d.1:c.67-127C>A | ||||
Intron_number | 2/6 | ||||
Reference | WBPaper00038208 | ||||
WBPaper00037807 | |||||
WBPaper00005369 | |||||
Method | WGS_Pasadena_Quinlan |