WormBase Tree Display for Variation: WBVar00222580
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| WBVar00222580 | Name | Public_name | WBVar00222580 | ||
|---|---|---|---|---|---|
| Other_name | pas34356 | ||||
| snp_F56D3[3] | |||||
| haw129883 | |||||
| cewivar00012710 | |||||
| F56D3.1.1:c.228T>A | |||||
| CE29410:p.Gly76= | |||||
| HGVSg | CHROMOSOME_II:g.4147057T>A | ||||
| Sequence_details | SMap | S_parent | Sequence | F56D3 | |
| Flanking_sequences | tgaggattttctaatatgaaggatattatttaggaaaagggttctggatttttattgcaaacttttttaaagttgaaattttttacatggagctttttggagaagaagagattgtttaaaaaaaatttcttaattcaattttaaaaataagcctactcgaattttaacctaaaaactagcttcacaatttccagacgtcggaaccattgatggagttcggcgggaattgttcaatgaagtagacggtggacaaatcgaagttacacctgacaacactccaaacgtggaagatcccttcgg | acctacgatgacaacaatgtagtatcagctgacaacgagaagattcttttcgttccaaaaccatatcgcccgggaggtgataagaaggaaccaaagaagaccacacaagcgccaacaactattagaactacgaggtgagggtagtatgtaggatttgaagttaattgagaactttcagaccaccaccagcgacaacgatccgaacgattccattcgttcagaccactccagccacttttgccactctcccaccggcgccagctgtgtaagttttcactttagattttttgctaattgcgt | |||
| Mapping_target | F56D3 | ||||
| Type_of_mutation | Substitution | T | A | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (15) | |||||
| Laboratory | AX | ||||
| Person | WBPerson6900 | ||||
| WBPerson4037 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| SNP_Wicks | |||||
| History | Acquires_merge | WBVar00549748 | |||
| WBVar01305068 | |||||
| WBVar01370272 | |||||
| WBVar00245175 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00018969 | |||
| Transcript | F56D3.1.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | F56D3.1.1:c.228T>A | ||||
| HGVSp | CE29410:p.Gly76= | ||||
| cDNA_position | 233 | ||||
| CDS_position | 228 | ||||
| Protein_position | 76 | ||||
| Exon_number | 4/11 | ||||
| Codon_change | ggT/ggA | ||||
| Amino_acid_change | G | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00004703 | |||||
| WBPaper00037807 | |||||
| Method | WGS_Pasadena_Quinlan |
