WormBase Tree Display for Variation: WBVar00221644
expand all nodes | collapse all nodes | view schema
| WBVar00221644 | Evidence | Paper_evidence | WBPaper00005369 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00221644 | |||
| Other_name | uCE6-1519 | ||||
| pas33420 | |||||
| cewivar00063205 | |||||
| R07D5.1c.1:c.-166+4319T>G | |||||
| R07D5.1e.1:c.267+4319T>G | |||||
| R07D5.1d.1:c.267+4319T>G | |||||
| R07D5.1a.1:c.-9+9911T>G | |||||
| HGVSg | CHROMOSOME_X:g.15137761A>C | ||||
| Sequence_details | SMap | S_parent | Sequence | CHROMOSOME_X | |
| Flanking_sequences | catgtatgaaggagacaaagatgttgcaacaaaaagcagtgtctaaaccaagcctgaccagagtttcgtttgataaaaaaacccaactacccttttacagaaaattggagcttgatcctagacatcaaacttggagttcaaattatgtagtccaataaaacgaaaaaacatgaggcggaaaagaaggagataaaagaagagagaaggtgcatcaatatacttaagacagaaaaggcaaaagtttttgggagggcgcccagaaagttttcatctcctcctgtcttcctgacgtcctcggaa | tctaaagtgcttctgcataatcattcgacaatgttttgggtgacttttgagaaggatgtgcgcaggatttttcccaaagcacttgaaacatctcagaagacaaacgtctacttactttctccttcattccttttgaagcgtcgttttgaagccggtggagccaaaagctcctgagaatagttttcagagtcagaaactaatacaaagtgggacacatattcaatttgcagaatgctcgtactaagtggatgattttgatgatgatgaagatactaatgaattatagaacttgagttttga | |||
| Mapping_target | CHROMOSOME_X | ||||
| Type_of_mutation | Substitution | A | C | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (37) | |||||
| Person | WBPerson6900 | ||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Million_mutation_project_reanalysis | |||||
| SNP_Swan | |||||
| History | Acquires_merge | WBVar00274788 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00006747 | |||
| Transcript | R07D5.1c.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | R07D5.1c.1:c.-166+4319T>G | ||||
| Intron_number | 1/11 | ||||
| R07D5.1a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | R07D5.1a.1:c.-9+9911T>G | ||||
| Intron_number | 1/12 | ||||
| R07D5.1d.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | R07D5.1d.1:c.267+4319T>G | ||||
| Intron_number | 1/9 | ||||
| R07D5.1e.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | R07D5.1e.1:c.267+4319T>G | ||||
| Intron_number | 1/10 | ||||
| Reference | WBPaper00005369 | ||||
| Method | WGS_Pasadena_Quinlan |
