WormBase Tree Display for Variation: WBVar00213505
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| WBVar00213505 | Evidence | Paper_evidence | WBPaper00038208 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00213505 | |||
| Other_name (11) | |||||
| HGVSg | CHROMOSOME_V:g.8953220G>A | ||||
| Sequence_details | SMap | S_parent | Sequence | T19A5 | |
| Flanking_sequences | atgtttcctatgtaaattcaccctg | ttcgattagtatcgtgaatgaaaaa | |||
| Mapping_target | T19A5 | ||||
| Type_of_mutation | Substitution | G | A | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | WGS_Hawaiian_Waterston | ||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| Laboratory | RW | ||||
| Person | WBPerson1562 | ||||
| WBPerson4037 | |||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar00588713 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00001526 | |||
| Transcript | T19A5.2g.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | T19A5.2g.1:c.580-324G>A | ||||
| Intron_number | 5/10 | ||||
| T19A5.2a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T19A5.2a.1:c.627+45G>A | ||||
| Intron_number | 5/10 | ||||
| T19A5.2e.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T19A5.2e.1:c.567+45G>A | ||||
| Intron_number | 5/10 | ||||
| T19A5.2d.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T19A5.2d.1:c.582+45G>A | ||||
| Intron_number | 5/10 | ||||
| T19A5.2h.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T19A5.2h.1:c.565-324G>A | ||||
| Intron_number | 5/10 | ||||
| T19A5.2f.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T19A5.2f.1:c.625-324G>A | ||||
| Intron_number | 4/8 | ||||
| T19A5.2b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T19A5.2b.1:c.1077+45G>A | ||||
| Intron_number | 5/10 | ||||
| T19A5.2c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T19A5.2c.1:c.1075-324G>A | ||||
| Intron_number | 5/10 | ||||
| Reference | WBPaper00038208 | ||||
| Remark | [20081124 db] this Variation was previously named hw80781 | ||||
| Method | WGS_Hawaiian_Waterston |
