WormBase Tree Display for Variation: WBVar00212101
expand all nodes | collapse all nodes | view schema
| WBVar00212101 | Evidence | Paper_evidence | WBPaper00038208 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00212101 | |||
| Other_name | haw79377 | ||||
| haw167978 | |||||
| cewivar00237607 | |||||
| C50E3.7b.1:c.822A>T | |||||
| C50E3.7a.1:c.903A>T | |||||
| CE52160:p.Ile301= | |||||
| CE52147:p.Ile274= | |||||
| HGVSg | CHROMOSOME_V:g.7594999T>A | ||||
| Sequence_details | SMap | S_parent | Sequence | C50E3 | |
| Flanking_sequences | ttatagtttcatagacgattgacat | atctgcaaaatatttgattaatttt | |||
| Mapping_target | C50E3 | ||||
| Type_of_mutation | Substitution | T | A | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | WGS_Hawaiian_Waterston | ||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00023072 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023139 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027648 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027660 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027662 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | RW | ||||
| Person | WBPerson1562 | ||||
| WBPerson4037 | |||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar00587843 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00016818 | |||
| Transcript | C50E3.7a.1 | VEP_consequence | splice_region_variant,synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | C50E3.7a.1:c.903A>T | ||||
| HGVSp | CE52160:p.Ile301= | ||||
| cDNA_position | 903 | ||||
| CDS_position | 903 | ||||
| Protein_position | 301 | ||||
| Exon_number | 4/4 | ||||
| Codon_change | atA/atT | ||||
| Amino_acid_change | I | ||||
| C50E3.7b.1 | VEP_consequence | splice_region_variant,synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | C50E3.7b.1:c.822A>T | ||||
| HGVSp | CE52147:p.Ile274= | ||||
| cDNA_position | 822 | ||||
| CDS_position | 822 | ||||
| Protein_position | 274 | ||||
| Exon_number | 4/4 | ||||
| Codon_change | atA/atT | ||||
| Amino_acid_change | I | ||||
| Reference | WBPaper00038208 | ||||
| Remark | [20081124 db] this Variation was previously named hw79377 | ||||
| Method | WGS_Hawaiian_Waterston |
