WormBase Tree Display for Variation: WBVar00209839
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WBVar00209839 | Evidence | Paper_evidence | WBPaper00005369 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00209839 | |||
Other_name | uCE5-1399 | ||||
haw77115 | |||||
cewivar00234277 | |||||
F26F12.3b.2:c.-256T>A | |||||
F26F12.3a.1:c.39-167T>A | |||||
F26F12.3b.1:c.-294T>A | |||||
F26F12.3c.1:c.-1612-167T>A | |||||
HGVSg | CHROMOSOME_V:g.5844399A>T | ||||
Sequence_details | SMap | S_parent | Sequence | F26F12 | |
Flanking_sequences | tggtagatggcatcatcggattagt | gtggccaaatacagtgaaacactat | |||
Mapping_target | F26F12 | ||||
Type_of_mutation | Substitution | A | T | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Swan | ||
WGS_Hawaiian_Waterston | |||||
Million_mutation_project_reanalysis | |||||
Laboratory | RW | ||||
Person | WBPerson1562 | ||||
Analysis | WGS_Hawaiian_Waterston | ||||
Million_mutation_project_reanalysis | |||||
SNP_Swan | |||||
History | Acquires_merge | WBVar00272059 | |||
Status | Live | ||||
Affects | Gene | WBGene00017834 | |||
Transcript | F26F12.3b.1 | VEP_consequence | 5_prime_UTR_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | F26F12.3b.1:c.-294T>A | ||||
cDNA_position | 87 | ||||
Exon_number | 1/7 | ||||
F26F12.3b.2 | VEP_consequence | 5_prime_UTR_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F26F12.3b.2:c.-256T>A | ||||
cDNA_position | 87 | ||||
Exon_number | 1/7 | ||||
F26F12.3a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F26F12.3a.1:c.39-167T>A | ||||
Intron_number | 2/6 | ||||
F26F12.3c.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F26F12.3c.1:c.-1612-167T>A | ||||
Intron_number | 1/6 | ||||
Reference | WBPaper00005369 | ||||
Remark | [20081124 db] this Variation was previously named hw77115 | ||||
Method | WGS_Hawaiian_Waterston |