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WormBase Tree Display for Variation: WBVar00209839

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Name Class

WBVar00209839EvidencePaper_evidenceWBPaper00005369
NamePublic_nameWBVar00209839
Other_nameuCE5-1399
haw77115
cewivar00234277
F26F12.3b.2:c.-256T>A
F26F12.3a.1:c.39-167T>A
F26F12.3b.1:c.-294T>A
F26F12.3c.1:c.-1612-167T>A
HGVSgCHROMOSOME_V:g.5844399A>T
Sequence_detailsSMapS_parentSequenceF26F12
Flanking_sequencestggtagatggcatcatcggattagtgtggccaaatacagtgaaacactat
Mapping_targetF26F12
Type_of_mutationSubstitutionAT
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004602From_analysisSNP_Swan
WGS_Hawaiian_Waterston
Million_mutation_project_reanalysis
LaboratoryRW
PersonWBPerson1562
AnalysisWGS_Hawaiian_Waterston
Million_mutation_project_reanalysis
SNP_Swan
HistoryAcquires_mergeWBVar00272059
StatusLive
AffectsGeneWBGene00017834
TranscriptF26F12.3b.1VEP_consequence5_prime_UTR_variant
VEP_impactMODIFIER
HGVScF26F12.3b.1:c.-294T>A
cDNA_position87
Exon_number1/7
F26F12.3b.2VEP_consequence5_prime_UTR_variant
VEP_impactMODIFIER
HGVScF26F12.3b.2:c.-256T>A
cDNA_position87
Exon_number1/7
F26F12.3a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF26F12.3a.1:c.39-167T>A
Intron_number2/6
F26F12.3c.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF26F12.3c.1:c.-1612-167T>A
Intron_number1/6
ReferenceWBPaper00005369
Remark[20081124 db] this Variation was previously named hw77115
MethodWGS_Hawaiian_Waterston